SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36572

Length: 811 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36572 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CAP domain containing protein	-	-	2.0e-21	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Pathogenesis-related protein 1	-	-	6.484e-33	-

Source	Gene names
Sma3	AT4g25780; AT4g25790; AT4g31470; AT4g33710; AT4g33720; AT4g33720/T16L1_210; AT4g33730; At1g01310; At1g50060; At2g14580; At2g14610; At2g19990; At3g19690; At4g25780; At4g25780/F14M19_60; At4g25790; At4g30320; At4g31470; At4g33710; At4g33720; At4g33730; At5g

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to vitamin B1	GO:0010266	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30320.1	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein chr4:14835833-14836318 FORWARD LENGTH=161	53%
RefSeq	Arabidopsis thaliana	NP_194761.1	allergen V5/Tpx-1-related family protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002324487.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
662	90		10		0.90298
702			87	12	0.992554
703			87	12	0.992554
711		12	87		0.992554
718	87		12		0.992554
720		12		87	0.992554
723	87		12		0.992554
732	14		85		0.993533
738	14		85		0.993533
742	14			85	0.993533
744		85		14	0.993533
753	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain