SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36555

Length: 2920 nt

UniGene Fasta

>sp_v3.0_unigene36555
AGAGCAATGCAAGAGAGTATAAAGAGTGACAGCGGCTGCCCTTCCCTCCCACTGTAATTACACAATTTTGTTTCGTTTTCCCGCAAAATTGAAGAGCCCTAGGGTTTCAACGAACAGACAATGCTTTCAATGGCTTTTGGTCGGGCTTGACTGCAACTCTCTTTCATAATTTTTCGTTCAGCGCCACCAATTATTAATAAACAATACAGTAAAGGACGACTACGACATGTCTTCGGCAGGGAAGAAGCTCATCAATGACCCTAACGATGTTGTGACAGAATTTATTGAAGGAATGGTTGAAACTTATCCAAATCTGCAATACTTGGATGGCTTTCCTGAGGTCAAGGTAGTATTGCGAGCTGATGTTTCTAGAGGGGCATACAACAAGGTTGCTGTTATCTCAGGAGGTGGAAGTGGGCATGAGCCAGCACATGCTGGATATGTGGGTGAGGGGATGTTAACGGCAGCAATTTGTGGAGATGTCTTCACTTCTCCTCCTGTGAATTCTATTTTAGCTGGAATTCGAGCTGTAACTGGGCCTCAAGGCTGTCTATTAATAGTAAAGAATTATACAGGTGATAGGTTGAACTTTGGTCTGGCAGCTGAGCAAGCAAAGTCTGAAGGATACAAAGTTGAGACGGTTATTGTTGGAGATGACTGTGCTCTTCCTCCTCCTCGGGGCATAACTGGACGCAGAGGTCTAGCGGGCACTGTTCTTGTAGAGAAGATTGCAGGAGCAGCAGCAGCAGCTGGTCTTTGTCTTGTAGATGTTGCTGCAGAGGCAAGTCATGCAGCTGCAATGGTTGGCACAATGGGGGTCGCTTTGTCTGTTTGTACTATTCCCGGTCAGGTTACCTCGGATAGGCTAGGTCCAGGGAAGATGGAACTAGGCCTTGGAATTCATGGGGAACCTGGAGCTGCTGTGGCTGATTTGCAACCAGTTGATGTAATGGTGTCTCATATTCTCAAACAGATTTTGTCAACGGAGACACAATATGTTCCAATCAAAGGTGGGAGTAAGGTTGCGTTAATGGTCAATGGATTGGGTGCCACACCTTTGATGGAACTCATGATAGCTACAGGAAAGGCAGTTGCCAAGCTGCAACTAGACCATGGTTTGGCTGTGGAGCGGGTTTATACAGGGTCATTTATGACTTCTCTTGATATGGCAGGGTTTTCCTTATCTGTAATGAAAGTAGACCAGTCTATTCTGCAGCGTTTAGATGCTCTGACTAAGGCACCTTATTGGGTTGTTGGTGTTGATGGGCCACGCCCTCCAACAACAATTCCAGTTGCATTGTCACCTCCTCGAGTAAAAACGAATGCGGTTGTTTGTCGGCCTCAGGAATTGACTGTGCAAGGCCGAGTTCTTGAAATTTCTATCAAGGCTGCAGCAGAAGAATTGATCAAAATTAAGGATTCTTTAAATGATTGGGACAGTAAAGTGGGTGATGGGGATTGTGGAAGCACAATATTTAGAGGAGCATCTGCAATTCTTGAGGATATGAACCAACACTATCCTTTGAATGATGCAGCTGCGACAGTAAATGAAATTGGAGTTTCTGTGAGAAGAGTTATGGGAGGGACTAGTGGTGTCATATATGATATATTTTGCAAAGCTGCTTATGCAAAGCTCAAGGAAAATTCTTCGATTATCTCAGCCAAACATTGGGCTGATGCTCTAGATGCAGCTGTTGCTGCTGTTAGTAAGTACGGTGGTGCTACAGAAGGTTATCGCACATTATTAGATGCTTTGATTCCTGCATCCAAAGCTCTCCACGAGAGACTAGCTGCAGGGGATGATCCAGTGACTGCATTTCTTTCTTCATCTGAGGTAGCTTTAACTGGTGCAGAGTCCACTAAAAATATGCAAGCTCAGGCTGGCCGTTCAGCATATGTGTCAGCTGAGAATCTGGCTTCAGTTCCAGACCCCGGAGCTATAGCTGCAGCAACATGGTATAGGGCAGCAGCCGTTGCAGTTGCAGAGTATTATCGGAAGTTAATATAACCTTACTGTACCTGATGTTACAACAGTGACATTATATGAGCAAGCTTTCCTTTCAAGACATCCTTGCAGCCTACCAAGTTCAATTCAAGAACAAGACAAAACTTGCAAGTGATTAGAAGCTGTTCAGTAAGCGTCAATGAGCAGTAATACATCCAAAGATCGTTTTGAGCCACATCCAACTCATTCAACAAGGTGATTTAGGGGTCGCTCATCTTTTGGCCTTGAATAAAGAAAAGATGAAAGAATAAAAGTGTCTCTAGGTCTCTGATCTTGGATTAAGGGTGGTAAGTCAAATTTTTGAAGAAAATACGGGAATATTGGAGCCTGGTTTCATTTATCCATTTCTTCAAACACAATAAGCTTTGGTGTTCGTCGTGTGTTAACTGTCAAATTTTGACGCCAGAAGCTATTGGTATTTGAACCTAGTTGATTCATTTCTTTTATTTTACTAGTACTGTAATGTGCTATATTTCCTTTCAGCATGGGGACAACCTAATAATTGGTGAACAGAAATGATTCTTAAATGAATTGAATCTTATCAATTTGCAAAATAGAAACGAATCTTAAGCTGAAGCTTGGCCTGCAAGTGTGAAGCCTATTCAAGATTTACCGTCATGCATTCTTCTGAGAGAAATGCAAATCCATGATGAAAATCATCCAAATGTGAGTGATAATTGTAAAAGCTAATCATATGCATATTAGACTAGCAATTTTGGGGTCCAATTTATCAGCGTCTGCAGATAAAATTATATTTTCTACTGCTGTATAGTTCTTAATCAGCTGATTGTAACATGCACGGTGTAAAGAACAAACCCCTATGGGAGGAAAACTATCAAAGATGAGTGGATGATGATTCAAGAATACTTCTCTTTCAGATGCGAAAAATGGAAATAAATCTTATCTTGGAACCCT

Ace file of the UniGene sp_v3.0_unigene36555

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative 3,4-dihydroxy-2-butanone kinase emb\|CAA72805.1\| putative 3,4-dihydroxy-2-butanone kinase [Solanum lycopersicum]	-	-	0.0	72%
FL-Next	sp=Putative 3,4-dihydroxy-2-butanone kinase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose phosphate pathway	00030	%
Sma3	Lipopolysaccharide biosynthesis	00540	%
Sma3	Nicotinate and nicotinamide metabolism	00760	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	DHBK;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	glycerone kinase activity	GO:0004371	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dak kinase	IPR004006	-	-
Sma3	Dak phosphatase	IPR004007	-	-
Sma3	Dihydroxyacetone kinase	IPR012734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G17770.1	Dihydroxyacetone kinase chr3:6081973-6085957 REVERSE LENGTH=595	75%
RefSeq	Arabidopsis thaliana	NP_188404.1	Dihydroxyacetone kinase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002318315.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O04059

Fln msg:

Fln protein: MSSAGKKLINDPNDVVTEFIEGMVETYPNLQYLDGFPEVKVVLRADVSRGAYNKVAVISGGGSGHEPAHAGYVGEGMLTAAICGDVFTSPPVNSILAGIRAVTGPQGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGITGRRGLAGTVLVEKIAGAAAAAGLCLVDVAAEASHAAAMVGTMGVALSVCTIPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVMVSHILKQILSTETQYVPIKGGSKVALMVNGLGATPLMELMIATGKAVAKLQLDHGLAVERVYTGSFMTSLDMAGFSLSVMKVDQSILQRLDALTKAPYWVVGVDGPRPPTTIPVALSPPRVKTNAVVCRPQELTVQGRVLEISIKAAAEELIKIKDSLNDWDSKVGDGDCGSTIFRGASAILEDMNQHYPLNDAAATVNEIGVSVRRVMGGTSGVIYDIFCKAAYAKLKENSSIISAKHWADALDAAVAAVSKYGGATEGYRTLLDALIPASKALHERLAAGDDPVTAFLSSSEVALTGAESTKNMQAQAGRSAYVSAENLASVPDPGAIAAATWYRAAAVAVAEYYRKLI*

Protein Length: 595

Fln nts: AGAGCAATGCAAGAGAGTATAAAGAGTGACAGCGGCTGCCCTTCCCTCCCACTGTAATTACACAATTTTGTTTCGTTTTCCCGCAAAATTGAAGAGCCCTAGGGTTTCAACGAACAGACAATGCTTTCAATGGCTTTTGGTCGGGCTTGACTGCAACTCTCTTTCATAATTTTTCGTTCAGCGCCACCAATTATTAATAAACAATACAGTAAAGGACGACTACGAC_-_ATGTCTTCGGCAGGGAAGAAGCTCATCAATGACCCTAACGATGTTGTGACAGAATTTATTGAAGGAATGGTTGAAACTTATCCAAATCTGCAATACTTGGATGGCTTTCCTGAGGTCAAGGTAGTATTGCGAGCTGATGTTTCTAGAGGGGCATACAACAAGGTTGCTGTTATCTCAGGAGGTGGAAGTGGGCATGAGCCAGCACATGCTGGATATGTGGGTGAGGGGATGTTAACGGCAGCAATTTGTGGAGATGTCTTCACTTCTCCTCCTGTGAATTCTATTTTAGCTGGAATTCGAGCTGTAACTGGGCCTCAAGGCTGTCTATTAATAGTAAAGAATTATACAGGTGATAGGTTGAACTTTGGTCTGGCAGCTGAGCAAGCAAAGTCTGAAGGATACAAAGTTGAGACGGTTATTGTTGGAGATGACTGTGCTCTTCCTCCTCCTCGGGGCATAACTGGACGCAGAGGTCTAGCGGGCACTGTTCTTGTAGAGAAGATTGCAGGAGCAGCAGCAGCAGCTGGTCTTTGTCTTGTAGATGTTGCTGCAGAGGCAAGTCATGCAGCTGCAATGGTTGGCACAATGGGGGTCGCTTTGTCTGTTTGTACTATTCCCGGTCAGGTTACCTCGGATAGGCTAGGTCCAGGGAAGATGGAACTAGGCCTTGGAATTCATGGGGAACCTGGAGCTGCTGTGGCTGATTTGCAACCAGTTGATGTAATGGTGTCTCATATTCTCAAACAGATTTTGTCAACGGAGACACAATATGTTCCAATCAAAGGTGGGAGTAAGGTTGCGTTAATGGTCAATGGATTGGGTGCCACACCTTTGATGGAACTCATGATAGCTACAGGAAAGGCAGTTGCCAAGCTGCAACTAGACCATGGTTTGGCTGTGGAGCGGGTTTATACAGGGTCATTTATGACTTCTCTTGATATGGCAGGGTTTTCCTTATCTGTAATGAAAGTAGACCAGTCTATTCTGCAGCGTTTAGATGCTCTGACTAAGGCACCTTATTGGGTTGTTGGTGTTGATGGGCCACGCCCTCCAACAACAATTCCAGTTGCATTGTCACCTCCTCGAGTAAAAACGAATGCGGTTGTTTGTCGGCCTCAGGAATTGACTGTGCAAGGCCGAGTTCTTGAAATTTCTATCAAGGCTGCAGCAGAAGAATTGATCAAAATTAAGGATTCTTTAAATGATTGGGACAGTAAAGTGGGTGATGGGGATTGTGGAAGCACAATATTTAGAGGAGCATCTGCAATTCTTGAGGATATGAACCAACACTATCCTTTGAATGATGCAGCTGCGACAGTAAATGAAATTGGAGTTTCTGTGAGAAGAGTTATGGGAGGGACTAGTGGTGTCATATATGATATATTTTGCAAAGCTGCTTATGCAAAGCTCAAGGAAAATTCTTCGATTATCTCAGCCAAACATTGGGCTGATGCTCTAGATGCAGCTGTTGCTGCTGTTAGTAAGTACGGTGGTGCTACAGAAGGTTATCGCACATTATTAGATGCTTTGATTCCTGCATCCAAAGCTCTCCACGAGAGACTAGCTGCAGGGGATGATCCAGTGACTGCATTTCTTTCTTCATCTGAGGTAGCTTTAACTGGTGCAGAGTCCACTAAAAATATGCAAGCTCAGGCTGGCCGTTCAGCATATGTGTCAGCTGAGAATCTGGCTTCAGTTCCAGACCCCGGAGCTATAGCTGCAGCAACATGGTATAGGGCAGCAGCCGTTGCAGTTGCAGAGTATTATCGGAAGTTAATATAA___CCTTACTGTACCTGATGTTACAACAGTGACATTATATGAGCAAGCTTTCCTTTCAAGACATCCTTGCAGCCTACCAAGTTCAATTCAAGAACAAGACAAAACTTGCAAGTGATTAGAAGCTGTTCAGTAAGCGTCAATGAGCAGTAATACATCCAAAGATCGTTTTGAGCCACATCCAACTCATTCAACAAGGTGATTTAGGGGTCGCTCATCTTTTGGCCTTGAATAAAGAAAAGATGAAAGAATAAAAGTGTCTCTAGGTCTCTGATCTTGGATTAAGGGTGGTAAGTCAAATTTTTGAAGAAAATACGGGAATATTGGAGCCTGGTTTCATTTATCCATTTCTTCAAACACAATAAGCTTTGGTGTTCGTCGTGTGTTAACTGTCAAATTTTGACGCCAGAAGCTATTGGTATTTGAACCTAGTTGATTCATTTCTTTTATTTTACTAGTACTGTAATGTGCTATATTTCCTTTCAGCATGGGGACAACCTAATAATTGGTGAACAGAAATGATTCTTAAATGAATTGAATCTTATCAATTTGCAAAATAGAAACGAATCTTAAGCTGAAGCTTGGCCTGCAAGTGTGAAGCCTATTCAAGATTTACCGTCATGCATTCTTCTGAGAGAAATGCAAATCCATGATGAAAATCATCCAAATGTGAGTGATAATTGTAAAAGCTAATCATATGCATATTAGACTAGCAATTTTGGGGTCCAATTTATCAGCGTCTGCAGATAAAATTATATTTTCTACTGCTGTATAGTTCTTAATCAGCTGATTGTAACATGCACGGTGTAAAGAACAAACCCCTATGGGAGGAAAACTATCAAAGATGAGTGGATGATGATTCAAGAATACTTCTCTTTCAGATGCGAAAAATGGAAATAAATCTTATCTTGGAACCCT

Fln Alignment:

Contig36555___MSSAGKKLINDPNDVVTEFIEGMVETYPNLQYLDGFPEVKVVLRADVSRGAYNKVAVISGGGSGHEPAHAGYVGEGMLTAAICGDVFTSPPVNSILAGIRAVTGPQGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGITGRRGLAGTVLVEKIXXXXXXXXXXXXXXXXXXXXXXXMVGTMGVALSVCTIPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVMVSHILKQILSTETQYVPIKGGSKVALMVNGLGATPLMELMIATGKAVAKLQLDHGLAVERVYTGSFMTSLDMAGFSLSVMKVDQSILQRLDALTKAPYWVVGVDGPRPPTTIPVALSPPR-VKTNAVVCRPQELTVQGRVLEISIKAAAEELIKIKDSLNDWDSKVGDGDCGSTIFRGASAILEDMNQHYPLNDAAATVNEIGVSVRRVMGGTSGVIYDIFCKAAYAKLKENS-SIISAKHWXXXXXXXXXXXSKYGGATEGYRTLLDALIPASKALHERLAAGDDPVTAFLSSSEVALTGAESTKNMQAQAGRSAYVSAENLASVPDPG
O04059_______________MDFQSKKLINDPNDVVTEFIEGLIENYPGLQYLDGFPEVKVVLRADVSGAKYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPNVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGIAGRRGLAGTLLVHKVAGAAAACGLPLADVAAEAKRASEMVGTMGVALSVCTSPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKEILSPETNYVPITRGSRVVLLINGLGATPLMELMIIAGKAVPELQLEHGLAVDRVYTGSFMTSLDMAGFSISVMKADQAILDRLDAPTKAPNWPVGAEGNRPPAKIPVPLPPSHSIKIEKTLSRPEKLSPQGHILETAIEAAATEVVNLRDNLNEWDNKVGDGDCGSTMFRGAVAILEDMKKYYPLNDPAETVNEIGASIGRVMGGTSGILYSIFCKAAYAKLKENAESVVTAIHWADALEAAIAAVSKYGGASAGYRTLLDALIPALSALKERLNAGDDPADAFIISAEAASAGAESTKHMQAQAGRSTYVPGDILASVPDPG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1817		66		33	0.997452
1838			25	75	0.996473
1841	20	80			0.995493
1843			20	80	0.995493
1844			20	80	0.995493
1895		80		20	0.995493
2138		11		88	0.923564
2704			80	20	0.999996
2778	81	18			0.999994
2868	90			10	0.90298
2869			90	10	0.90298
2872		11		88	0.923564
2874	12	87			0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
736	750	AGC AGC AGC AGC AGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain