SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36537

Length: 359 nt

UniGene Fasta

>sp_v3.0_unigene36537
TTGCTTCGATTATATGATTAGTCCTCTCTTACCGATTAACATTTCAGTGTGATATACATCTATTGGCTTGGGTACGGAAGTCTACTTTACTCTGAAATTTCGATCCCCGGATCAAGTGCGATTACGTCTATTGGCTTGGGAGCCGAAGGCTACACTACTCTGAAATTTCGAACCCCGGTATCAGGCCGAATTTGCCAGGAGTAAATCATCTCTTTGGCTGTGCATCATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGATTGGCGTCTTTTCAAAACTTACTAATGGATATTGCCTGGTAGGCCATTGGAGGATCAGAAACTTTTACAGTACATTTGAGGCAGAACTGGCAGATG

Ace file of the UniGene sp_v3.0_unigene36537

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain A, Crystal Structure Of S.Cerevisiae Eif6 pdb\|2X7N\|B Chain B, Mechanism Of Eif6s Anti-Association Activity	-	-	1.0e-10	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Eukaryotic translation initiation factor 6	-	-	5.207e-08	-

Source	Gene names
Sma3	At3g55620; CHLREDRAFT_188065; EIF6A; F1I16_30; GSVIVT00019318001; OJ1340_C08.131; Os07g0639800; OsI_27044; OsJ_25302; PHATRDRAFT_24493; PHYPADRAFT_173032; PHYPADRAFT_194687; POPTRDRAFT_719158; POPTRDRAFT_749741; RCOM_0280610; VITISV_038707; eIF6;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	ribosome binding	GO:0043022	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	mature ribosome assembly	GO:0042256	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55620.1	emb1624 Translation initiation factor IF6 chr3:20634581-20636312 FORWARD LENGTH=245	1.0e-13	70%
RefSeq	Arabidopsis thaliana	NP_191121.1	Translation initiation factor IF6 [Arabidopsis thaliana]	1.0e-13	70%
RefSeq	Populus trichocarpa	XP_002310109.1	predicted protein [Populus trichocarpa]	7.0e-14	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 44 - 245

Fln protein: MATRTQFENSSEIGVFSKLTNGYCLVGHWRIRNFYSTFEAELAD

Protein Length: 45

Fln nts: TTGCTTCGATTATATGATTAGTCCTCTCTTACCGATTAACATTTCAGTGTGATATACATCTATTGGCTTGGGTACGGAAGTCTACTTTACTCTGAAATTTCGATCCCCGGATCAAGTGCGATTACGTCTATTGGCTTGGGAGCCGAAGGCTACACTACTCTGAAATTTCGAACCCCGGTATCAGGCCGAATTTGCCAGGAGTAAATCATCTCTTTGGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGATTGGCGTCTTTTCAAAACTTACTAATGGATATTGCCTGGTAGGCCATTGGAGGATCAGAAACTTTTACAGTACATTTGAGGCAGAACTGGCAGATG

Fln Alignment:

Contig36537___MATRTQFENSSEIGVFSKLTNGYCLVGHWRIRNFYSTFEAELAD
A9NK83_______________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain