SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36445

Length: 980 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36445

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat stress transcription factor B-4b n=3 Tax=Oryza sativa RepID=HFB4B_ORYSJ	-	-	4.99983e-42	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Heat shock transcription factor	-	-	9.994e-10	-

Source	Gene names
Sma3	23.t00064; At1g32330; At1g46264; At3g02990; At3g22830; At3g24520; At3g63350; At4g13980; At4g17750; At4g18880; At4g36990; At5g03720; At5g16820; At5g43840; At5g45710; At5g54070; B1060H01.5; B1129G05.5; CHLREDRAFT_122706; F13C5.50; F13E7.6; F16M2.200; F17C15

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	fruit morphogenesis	GO:0048530	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, your sequence is shorter than subject: 255 - 489

Fln protein: NEAAIAL*IMLARAAADQEATDGGRVLMAVAGGVRHAGRLVASPFLVKTYRLVDDPSTDHIVSWGDRNNTFVVWRPKEFSASVLPCYFNHTNFSSFVRQLNTYGFRKIVRGRCEFANDLFRKGHTHLLSHIQRRKPSSTFTAQPPQFEYDKSTSLNPNSLSTVEDSCVPAVAPSLSEENEILRRNNSLLLSEVARLHNICSNDVTLYSRHNTNNPPLTDMDGSKIDNGSPSSSMTEVAEPINMIPPKLFGVPLY*

Protein Length: 256

Fln nts: AAACGAAGCTGCTATCGCCTTGTAAATAATGTTAGCAAGGGCTGCTGCAGATCAGGAAGCTACCGACGGCGGTAGAGTCCTAATGGCAGTTGCTGGAGGTGTTCGGCATGCAGGGAGGCTAGTGGCCTCTCCGTTTCTGGTAAAGACATACCGTTTAGTGGATGATCCCTCCACAGACCACATTGTTTCATGGGGCGATCGTAACAACACCTTTGTGGTATGGCGCCCCAAAGAGTTCTCGGCGTCTGTTCTGCCATGTTATTTCAACCACACCAATTTCTCCAGCTTTGTTCGACAGCTCAATACCTATGGATTTCGAAAAATAGTTCGGGGACGGTGCGAGTTCGCGAACGATTTGTTCAGGAAGGGCCACACACATCTGCTCTCTCATATCCAGAGAAGAAAACCGTCCAGTACCTTCACCGCGCAGCCACCGCAGTTTGAATATGATAAATCAACATCGCTAAACCCTAATTCATTATCTACTGTAGAAGACTCCTGCGTTCCGGCGGTGGCCCCTTCTCTGTCGGAAGAGAACGAGATACTACGAAGAAATAATTCGTTGCTCTTGTCGGAGGTCGCCCGCCTGCATAATATATGCAGCAACGATGTCACGCTATATAGTCGGCACAACACCAATAATCCTCCATTAACCGACATGGACGGATCGAAAATAGACAACGGCAGCCCTAGTAGTTCAATGACAGAAGTTGCAGAGCCGATCAATATGATTCCTCCAAAATTGTTCGGAGTCCCTCTTTATTAGGAAAACCCCGTATCTTCTTACAGCGGTATATTATCTCTTTAGAGCACTAACATGATTTTAAGGTCATGGGGTGAGCTGTATGGTTTCCACATGAATGAAATCCCATTCACAACGAATTGGTGTTCTATATTGAGGACTAGTTGCTCTCCCTTGTTTATATTAAGAATATGAGTCTGCGAAAATTATCAATATTATGCTGTATGTTAATTTACTA

Fln Alignment:

Contig36445___PFLVKTYRLVDDPSTDHIVSWGDRNNTFVVWRPKEFSASVLPCYFNHTNFSSFVRQLNTYGFRKIVRGRCEFANDLFRKGHTHLLSHIQRRKPSSTFTAQPPQFEYDKSTSLNPNSLSTVEDSCVPAVAPSLSEENEILRRNNSLLLSEVARL
A9NUX6_______________PFLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKLIQRRKPSC-----PPQF-IDNLHHHHQQDQQQGMGACVEVGQFGMVGEIEGLRRDKSVLMLEVVKL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
621	75			25	0.996473
730		44	55		1.0
845		12		87	0.992554
881	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain