SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36387

Length: 2495 nt

UniGene Fasta

>sp_v3.0_unigene36387
TAAGACTTCATCTCAATTGTTTTTCCAAATCCTACTGAAAACAAAATACACCATGGATAAGAACTTTGACTTACATTCACATATAAACGAAAATTTGTCCCATGACATATAAAGGAAAATTTTCTCCAATACCAGACGTCCACCTTTGCCGTAGTTTGGGTAATCGGAAAAGTAACTGCCCTCCGCGTGCGAAACGCGTGTGGTACAGAAAAGTTACGGCATTTAGTGGCGCAAGGCGGAACCGCATGTAAATTCAATATCAAGTCCAGAGTCAAGATAACGTAAAACCGAGGTTATCAGTCACAACTACTGAGAGAGCTGAGCGTACTTTGGTCCCCCCCTCTCCCGGCTCTTCCATCGGCGCTCTTTGCAGTGGCGGCAAGATGCGGGGGTTTGCAAATTCCACGCCATAGGAAAGATTCCCCAAATGGACCAGCAATATTAATTATGGAGTCTGATTCTACACATTTCTTGCATGAATGCGAGACCGATTGAGCAATTTATTTTCTTGATTTGAAGCCTGAAGCGAAGCAATGGGGTGCTGTTTCTCAGACACAGCAGGCGGCCAGCAGGCAGTAGGTAGCACTGACGTCAACGCGGACCACTACGCGATTAGCCACGCTCCTCAGGATGATCTCAACCGCGAGGCTTTCGCTGCGGTCGAAGGTTTCATGAAATTCCGGGGATTTAATTCGCTCTCATCGCAACTCGAGTTATCATTGTCTGCATCTAATCTGCGTGACCGGGATATACTTTCCAAGAGTGATCCTATGGCTGTTGTATATACAAAGAAACAAGATGGATCATTTGAAGAACTAGGTCGTACTGAAGTAATTTTAAATTCTTTGGAACCTCTCTGGATAACAAAACAAAGAATCATATACTATTTTGAGATTCTCCAGCCATTACTTTTCAGAGTGTATGATGTTGATAGCAAGTTTCACAATGTACCAGCCAAGATGCTACGTTTGGATGAACAACAATTTCTTGGGGAGGCAGAATGTTTTCTGTCAGAGATAGTGACAAAACCAGGTAGAATTCTGACCCTCCCGCTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGATTCAAAAACTATGGTTGAGATGGTTTTCCGCTGTGCTGATCTTCCAAACAAGGATCTATTCTCCAAAAGTGACCCTTTTTTAAAGATATTCAGACCAGTTGAAAATGGGCGTTTTGTCCCGGTGTGTAAGACAGAAGTTAAAATGAATGACCTCAATCCACTATGGAAGCCATTGACTTTGAGCATACAACAGATTGGGCATAAGGATAACCCGTTAATGATTGACTGCTACAATTTCAACAATAGTGGGAATCATGAATTGATTGGAAGGATGCAAAAATCGTTGGGTGACCTTGAGAAGCTTTATATAAGTAGGAGTGGAGAAAACTTCTATTTACCAACAGGCAGTAGTAATCATCATAACAAGATATTGAAGGGTCAGTTATTTGTAGAAAAGTTCTCAGCAAGCACAAAACATAGTTTCTTGGACTACATCGCCAATGGGTACGAGTTAAACTTCATGGTGGCTATAGATTTTACAGCTTCGAATGGGAATCCACGGTTACCAGATTCTTTGCACTATCTCGACCCTTCGGGCCGGTTTAATGCATATCAGAGAGCAATCTCATCGGTTGGTGAAGTCCTGGAGTTTTATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGTAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAATTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGATTCACCGAAATGTAGTTTTGACAAATCTGAGCTGGTTGGTCGAAAATCCCTATTCTGATGTGCTACATCTTTTGACAGAACTGATCATGAATAGTGTTCCTTTTTGTACTGGTTTCTTTCATGTACAGAAAGAATATTTTTTGGGCGCTGCAAATATTTTAGTCTGGCATAATATGCTCATTTAACTAC

Ace file of the UniGene sp_v3.0_unigene36387

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] ref\|NP_974977.1\| calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] sp\|Q941L3.2\|BON1_ARATH RecName: Full=Protein BONZAI 1; AltName: Full=COPIN	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Copine	IPR010734	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61900.1	BON1, CPN1, BON Calcium-dependent phospholipid-binding Copine family protein chr5:24855908-24859150 REVERSE LENGTH=578	62%
RefSeq	Arabidopsis thaliana	NP_974977.1	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002318175.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLG3

Fln msg:

Fln protein: MGCCFSDTAGGQQAVGSTDVNADHYAISHAPQDDLNREAFAAVEGFMKFRGFNSLSSQLELSLSASNLRDRDILSKSDPMAVVYTKKQDGSFEELGRTEVILNSLEPLWITKQRIIYYFEILQPLLFRVYDVDSKFHNVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGTEHKGPSPRLPKFGEITLQVEETIDSKTMVEMVFRCADLPNKDLFSKSDPFLKIFRPVENGRFVPVCKTEVKMNDLNPLWKPLTLSIQQIGHKDNPLMIDCYNFNNSGNHELIGRMQKSLGDLEKLYISRSGENFYLPTGSSNHHNKILKGQLFVEKFSASTKHSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYLDPSGRFNAYQRAISSVGEVLEFYDTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQIADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEPVVLES*

Protein Length: 592

Fln nts: TAAGACTTCATCTCAATTGTTTTTCCAAATCCTACTGAAAACAAAATACACCATGGATAAGAACTTTGACTTACATTCACATATAAACGAAAATTTGTCCCATGACATATAAAGGAAAATTTTCTCCAATACCAGACGTCCACCTTTGCCGTAGTTTGGGTAATCGGAAAAGTAACTGCCCTCCGCGTGCGAAACGCGTGTGGTACAGAAAAGTTACGGCATTTAGTGGCGCAAGGCGGAACCGCATGTAAATTCAATATCAAGTCCAGAGTCAAGATAACGTAAAACCGAGGTTATCAGTCACAACTACTGAGAGAGCTGAGCGTACTTTGGTCCCCCCCTCTCCCGGCTCTTCCATCGGCGCTCTTTGCAGTGGCGGCAAGATGCGGGGGTTTGCAAATTCCACGCCATAGGAAAGATTCCCCAAATGGACCAGCAATATTAATTATGGAGTCTGATTCTACACATTTCTTGCATGAATGCGAGACCGATTGAGCAATTTATTTTCTTGATTTGAAGCCTGAAGCGAAGCA_-_ATGGGGTGCTGTTTCTCAGACACAGCAGGCGGCCAGCAGGCAGTAGGTAGCACTGACGTCAACGCGGACCACTACGCGATTAGCCACGCTCCTCAGGATGATCTCAACCGCGAGGCTTTCGCTGCGGTCGAAGGTTTCATGAAATTCCGGGGATTTAATTCGCTCTCATCGCAACTCGAGTTATCATTGTCTGCATCTAATCTGCGTGACCGGGATATACTTTCCAAGAGTGATCCTATGGCTGTTGTATATACAAAGAAACAAGATGGATCATTTGAAGAACTAGGTCGTACTGAAGTAATTTTAAATTCTTTGGAACCTCTCTGGATAACAAAACAAAGAATCATATACTATTTTGAGATTCTCCAGCCATTACTTTTCAGAGTGTATGATGTTGATAGCAAGTTTCACAATGTACCAGCCAAGATGCTACGTTTGGATGAACAACAATTTCTTGGGGAGGCAGAATGTTTTCTGTCAGAGATAGTGACAAAACCAGGTAGAATTCTGACCCTCCCGCTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGATTCAAAAACTATGGTTGAGATGGTTTTCCGCTGTGCTGATCTTCCAAACAAGGATCTATTCTCCAAAAGTGACCCTTTTTTAAAGATATTCAGACCAGTTGAAAATGGGCGTTTTGTCCCGGTGTGTAAGACAGAAGTTAAAATGAATGACCTCAATCCACTATGGAAGCCATTGACTTTGAGCATACAACAGATTGGGCATAAGGATAACCCGTTAATGATTGACTGCTACAATTTCAACAATAGTGGGAATCATGAATTGATTGGAAGGATGCAAAAATCGTTGGGTGACCTTGAGAAGCTTTATATAAGTAGGAGTGGAGAAAACTTCTATTTACCAACAGGCAGTAGTAATCATCATAACAAGATATTGAAGGGTCAGTTATTTGTAGAAAAGTTCTCAGCAAGCACAAAACATAGTTTCTTGGACTACATCGCCAATGGGTACGAGTTAAACTTCATGGTGGCTATAGATTTTACAGCTTCGAATGGGAATCCACGGTTACCAGATTCTTTGCACTATCTCGACCCTTCGGGCCGGTTTAATGCATATCAGAGAGCAATCTCATCGGTTGGTGAAGTCCTGGAGTTTTATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGTAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAATTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGA___TTCACCGAAATGTAGTTTTGACAAATCTGAGCTGGTTGGTCGAAAATCCCTATTCTGATGTGCTACATCTTTTGACAGAACTGATCATGAATAGTGTTCCTTTTTGTACTGGTTTCTTTCATGTACAGAAAGAATATTTTTTGGGCGCTGCAAATATTTTAGTCTGGCATAATATGCTCATTTAACTAC

Fln Alignment:

Contig36387___MGCCFSDTAGGQQAVGSTDVNADHYAISHAPQDDLNREAFAAVEGFMKFRGFNXXXXXXXXXXXXXXXRDRDILSKSDPMAVVYTKKQDGSFEELGRTEVILNSLEPLWITKQRIIYYFEILQPLLFRVYDVDSKFHNVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGTEHKGPSPRLPKFGEITLQVEETIDSKTMVEMVFRCADLPNKDLFSKSDPFLKIFRPVENGRFVPVCKTEVKMNDLNPLWKPLTLSIQQIGHKDNPLMIDCYNFNNSGNHELIGRMQKSLGDLEKLYISRSGENFYLPTGSSNHHNKILKGQLFVEKFSASTKHSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYLDPSGRFNAYQRAISSVGEVLEFYDTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQIADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEP
B8LLG3_______________MGCCFSDIAGGQQAVGGTGVNEDRYTMN---PDQADREAFSAVKTFMNSRGLNALSYQFELSLSASNLRDRDILSKSDPMAVVYTKKQDGSLEELGRTEVILNSLDPLWITKQRVIYFFEILQPLLFRVYDVDSKFHSVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGAEHKGPSPRVQKFGELILQVEETIDSKTMVEMVFRCTDLPNKDLFSKSDPFIKISRPVQNGRFIPLCKTEVKMNDLNPVWKPLTLSIQQIGSKDNPLIIDCYNFNNSGNHELLGRMQKSLDDLEKLCISKSGENFYLPTGNNNHHNKILKGHLFVEKFSTSTKPSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYMDPSGRSNAYQRAIWSVGEVLEFYDTDKRFPAWGFGGRPIDGPVSHCFNLNGSGSYAEVEGISGIMSAYASALRNVSLAGPTLFGQVINSAAQIADIHAGQRKYYVLLIITDGVITDLQETKDAIVRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLQSEETVAQSLLAELPMQFLSYMKSRHIEP

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
706		83	16		0.994512
707	83			16	0.994512
708	83			16	0.994512
709		83	16		0.994512
711		50		50	1.0
713	83			16	0.994512
837	16			83	0.994512
838	16			83	0.994512
840	83		16		0.994512
841	83			16	0.994512
966	66			33	0.997452
1307	90			10	0.90298
1421	10	5		85	0.999793
1600		87		12	0.999964
1667	10		90		0.90298
1668	90			10	0.90298
1669		90		10	0.90298
1673			10	90	0.90298
1674		90	10		0.90298
1679		88		11	0.923564
1747	90	10			0.90298
1750	10		90		0.90298
1761			87	12	0.992554
1896		16		83	0.994512
2083	16			83	0.994512
2084	16		83		0.994512
2332	83		16		0.999991
2357		81		18	0.999994
2427		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain