SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36376

Length: 478 nt

UniGene Fasta

>sp_v3.0_unigene36376
TGTAATATTCATGGAATTAAAAGGGAATTCTCGGCTGCTAGAACACCTCAACAAAATGGGGTAGTTGAAAGACGAAACCGAACATTCCAAGAGATGGCAAGAACCATGCTATTAGCAGCAGACCTACAGCCTAAATTCTGGAAGGAAGCAGTAGGGACAGCTGTCTATACACTGAATCGGACTCAATTAAGACCAAATTGTGACAAAACTCCTTATGAGCTATGGAAAGGAAGACCTGCTTCGATGAAGTACTTCAAAATATTTGGAAGCAAGTGCTTCATAAAAATAAATGATGGCTCACCTGGAAAATTTGATTCTCGGGTTGATGAGGGGATATTTCTTGGATACTCTCCACGAAGCAAGGCTTACAAGTGCTACAATTTTCAACTGAAGAAAATAGTGGAAAGCATCGATGTAAAGGTTGATGAAGATCTTCCAGAAAAGGAAATCGAAGAACAAGAAGATGACTTTCTCATTG

Ace file of the UniGene sp_v3.0_unigene36376

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to Copia protein (Gag-int-pol protein)	-	-	2.0e-26	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.283e-21	-

Source	Gene names
Sma3	At2g17490; LOC_Os03g01684; LOC_Os03g12600; LOC_Os03g13260; LOC_Os03g15140; LOC_Os03g22300; LOC_Os03g24190; LOC_Os03g31530; LOC_Os03g33530; LOC_Os03g33940; LOC_Os03g44470; LOC_Os03g49980; LOC_Os03g55860; LOC_Os03g63124; LOC_Os10g05380; LOC_Os10g10300; LOC_

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 159 - 407

Fln protein: CNIHGIKREFSAARTPQQNGVVERRNRTFQEMARTMLLAADLQPKFWKEAVGTAVYTLNRTQLRPNCDKTPYELWKGRPASMKYFKIFGSKCFIKINDGSPGKFDSRVDEGIFLGYSPRSKAYKCYNFQLKKIVESIDVKVDEDLPEKEIEEQEDDFLI

Protein Length: 160

Fln nts: TGTAATATTCATGGAATTAAAAGGGAATTCTCGGCTGCTAGAACACCTCAACAAAATGGGGTAGTTGAAAGACGAAACCGAACATTCCAAGAGATGGCAAGAACCATGCTATTAGCAGCAGACCTACAGCCTAAATTCTGGAAGGAAGCAGTAGGGACAGCTGTCTATACACTGAATCGGACTCAATTAAGACCAAATTGTGACAAAACTCCTTATGAGCTATGGAAAGGAAGACCTGCTTCGATGAAGTACTTCAAAATATTTGGAAGCAAGTGCTTCATAAAAATAAATGATGGCTCACCTGGAAAATTTGATTCTCGGGTTGATGAGGGGATATTTCTTGGATACTCTCCACGAAGCAAGGCTTACAAGTGCTACAATTTTCAACTGAAGAAAATAGTGGAAAGCATCGATGTAAAGGTTGATGAAGATCTTCCAGAAAAGGAAATCGAAGAACAAGAAGATGACTTTCTCATTG

Fln Alignment:

Contig36376___CNIHGIKREFSAARTPQQNGVVERRNRTFQEMARTMLLAADLQPKFWKEAVGTAVYTLNRTQLRPNCDKTPYELWKGRPASMKYFKIFGSKCFIKINDGSPGKFDSRVDEGIFLGYSPRSKAYKCYNFQLKKIVESIDVKVDE
B8LKX7_______________CKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain