SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36374

Length: 234 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene36374
TATTAATGAGGGTATAAAGCACAGATGGCGGCATCCAGATGAAGCTGTCCACAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTTGTATTCAGAAGAAGTTATAGCAGATTTAGTATTATTCCTGCTCTTCTCTGGTCACGAGACCTCAGCCTCAGCTACGGTATTTTCTATCAAATTTCTCACGGACTGTCCCCAGGCACTTCTGTGTACTTAGTGTGCAAATCTCTATTC

Ace file of the UniGene sp_v3.0_unigene36374 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	2.0e-17	66%
FL-Next	sp=Cytochrome P450 720B2; Pinus taeda (Loblolly pine).	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	4.618e-06	-

Source	Gene names
Sma3	CYP720B1; CYP720B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q50EK5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 163 aas, your sequence is shorter than subject: 72 - 487

Fln protein: INEGIKHRWRHPDEAVHNDFLGELLKEDLYSEEVIADLVLFLLFSGHETSASATVFSIKFLTDCPQALLCT*

Protein Length: 73

Fln nts: TATTAATGAGGGTATAAAGCACAGATGGCGGCATCCAGATGAAGCTGTCCACAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTTGTATTCAGAAGAAGTTATAGCAGATTTAGTATTATTCCTGCTCTTCTCTGGTCACGAGACCTCAGCCTCAGCTACGGTATTTTCTATCAAATTTCTCACGGACTGTCCCCAGGCACTTCTGTGTACTTAGTGTGCAAATCTCTATTC

Fln Alignment:

Contig36374___INEGIKHRWRHPDEAVHNDFLGELLKEDLYSEEVIADLVLFLLFSGHETSASATVFSIKFLTDCPQAL
Q50EK5_______________IYESIEDRRQHP-EAVHNDLLTKLLKEDSFSEEIIADFILFLLFAGHETSSRSMSFAIKFLTDCPRAL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
75	50	50			1.0
93		10	90		0.90298
97		90		10	0.90298
101	90	10			0.90298
111		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain