SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36372

Length: 725 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36372

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin H-type n=5 Tax=Picea RepID=TRXH_PICMA	-	-	7.0e-25	75%
FL-Next	sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Thioredoxin h	-	-	0.0	-

Source	Gene names
Sma3	At1g19730; At1g19730/F14P1_32; At1g45145; At3g17870; At3g17880; At3g51030; At5g39950; At5g42980; BOPC17; CHLREDRAFT_196118; F14P1.32; F24M12.70; F27F5.21; F6F9.21; GSVIVT00014532001; GSVIVT00014535001; GSVIVT00017858001; GSVIVT00020873001; GSVIVT000289700

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	glycerol ether metabolic process	GO:0006662	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to microbial phytotoxin	GO:0010188	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Thioredoxin	IPR005746	-	-
Sma3		IPR006662	-	-
Sma3	Tify	IPR010399	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51030.1	ATTRX1, ATTRX H1, TRX1 thioredoxin H-type 1 chr3:18951123-18951955 REVERSE LENGTH=114	2.0e-20	58%
RefSeq	Arabidopsis thaliana	NP_190672.1	thioredoxin H1 [Arabidopsis thaliana]	3.0e-20	58%
RefSeq	Populus trichocarpa	XP_002307687.1	thioredoxin h [Populus trichocarpa]	6.0e-23	67%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
113		75		25	0.996473
148	14		85		0.993533
190		85		14	0.993533
196	14		85		0.993533
407	14			85	0.993533
408	14		85		0.993533
409			85	14	0.993533
410	85		14		0.993533
411		85		14	0.993533
486	20			80	0.995493
487	20		80		0.995493
490			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain