SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36216

Length: 1236 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36216

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	molybdenum cofactor sulfurase-like protein 1 [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	molybdenum ion binding	GO:0030151	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Molybdenum cofactor sulfurase, C-terminal	IPR005302	-	0.0	-
Sma3	MOSC, N-terminal beta barrel	IPR005303	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30910.1	Molybdenum cofactor sulfurase family protein chr1:11000912-11002801 FORWARD LENGTH=318	58%
RefSeq	Arabidopsis thaliana	NP_174376.1	molybdenum cofactor sulfurase-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002304601.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM27

Fln msg:

Fln protein: MQRIGSLISSIFGSSEAQKPAAKVKAIYIYPIKACRGISVPRACIFPTGFRWDRQWLVVNSKGRACTQRVEPKLALVEVSLPIEAFSEEWELTADSFLTVTAPGMDPLKVPLLQKNCEKVENVSVWEWSGPALDEGTDAADWFSRYLGKPYQLVRFDTASEVRPTAAEYARGFKTMFSDGYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTFRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKKKRGEVFFGQNLVCEESLKPKAGKEKTISVGDSIYVLKMVSSLGEAAV*

Protein Length: 326

Fln nts: AGAGCAAGTCAAAGTAAGCTGAAGACAGTGAAGCTGTAAGC_-_ATGCAGAGAATCGGGTCATTGATCAGTTCTATTTTCGGTAGCAGTGAAGCTCAGAAACCTGCAGCTAAAGTCAAAGCAATTTACATATATCCTATCAAGGCTTGCCGAGGCATTTCCGTGCCTCGGGCCTGCATTTTCCCCACTGGGTTCAGATGGGACAGACAATGGCTAGTTGTAAATTCAAAGGGTCGGGCATGCACACAAAGAGTGGAACCAAAGCTTGCTTTAGTGGAAGTATCTCTACCAATTGAGGCATTTAGTGAGGAATGGGAACTTACAGCTGATTCATTTCTAACTGTGACAGCACCGGGGATGGACCCTTTAAAAGTTCCTCTACTGCAGAAAAATTGTGAAAAGGTAGAGAATGTTTCAGTATGGGAATGGTCTGGCCCTGCACTTGATGAGGGTACTGATGCAGCTGACTGGTTTTCGAGGTACCTTGGCAAACCTTACCAGTTGGTGAGGTTTGATACAGCATCAGAGGTCAGGCCAACAGCTGCTGAATATGCTCGTGGTTTTAAGACTATGTTTTCTGACGGGTACCCTTTTCTTGTGATCTCTCAGGAGTCATTGGATACTTTGAACAAGCAACTGAAGGAACCTCTTCCAATCAACCGCTTTAGGACCAATATCTTCGTAGAAAATTGTGAACCCTTTGCTGAAGATTTGTGGAAAACTTTCAGAATTAATGGATTGACATTCCATGGTGTGAAGCTTTGTGCGCGGTGCAAGGTGCCTACTGTGAATCAAGAAACAGGAATTGCAGGAGCTGAACCGACTGAAACCTTGTCAAAATTTAGATCTGGCAATATCTTATTCTCAGGAAAGAAAAAACGTGGAGAGGTTTTCTTTGGACAGAATTTGGTTTGTGAGGAATCATTGAAGCCTAAAGCTGGAAAAGAAAAAACCATCAGTGTGGGCGATTCAATATATGTTCTCAAGATGGTTAGCTCTTTGGGAGAAGCAGCTGTATGA___TAGAGTTAAAACACTGGACTTTTATAAGAATAAGAATAACATGTTATTTTTTACAAGTAGTTACCATAGTCTGAAAAAATTGTTTTATAAGAATAACATGTTATTTGTTTTAGGTAGTTACCATAGTCTGAAAAACTTATAAAATGGTTTAAGGGGACGTACGTGCAAAAACTTCCATCCTTTATACGGATGCTACCACAATTATTTGATTTTGTCATAA

Fln Alignment:

Contig36216___EAQKPAAKVKAIYIYPIKACRGISVPRACIFPTGFRWDRQWLVVNSKGRACTQRVEPKLALVEVSLPIEAFSEEWELTADSFLTVTAPGMDPLKVPLLQKNCEKVENVSVWEWSGPALDEGTDAADWFSRYLGKPYQLVRFDTASEVRPTAAEYARGFKTMFSDGYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTFRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKKKRGEVFFGQNLVCEESLKPKAGKEKTISVGDSIYVLKMVSSLGEAA
A9NM27_______________EAEKPAAKVKAIYIYPIKACRGISLPQVCVCPTGFRWDRQWLVVNSKCRAYTQRPEPKLALVEVSLPMEAFSEEWEPTADSFLTVKAPGMDPLKVPLLQQNREKVENVSMWEWSGSALDEGADAADWFSRYLGKPCWLVRFDTASEVRPTPAEYARGFKTMFSDEYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTLRINGLTFHGVKLCARCKVPTVNQETGIPGNEPAETLSKFRSGDILFSGKKKRGEVFFGQNLICEESLNPKVCKAKTINVGDSVYVLKMASSWEEAA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
61		14	85		0.993533
66	14		85		0.993533
169		83		16	0.994512
205	87		12		0.992554
279		87		12	0.992554
601		14		85	0.993533
806			88	11	0.923564
807			88	11	0.923564
839	75			12	0.975346
944	75		25		0.996473
950	80	20			0.995493
986	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain