SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36197

Length: 985 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36197

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Chitinase 1; AltName: Full=Tulip bulb chitinase-1; Short=TBC-1; Flags: Precursor dbj\|BAA88408.1\| bulb chitinase-1 [Tulipa bakeri]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Chitinase 1, putative	-	-	9.627e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	6.25e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		6.25e-13	%

Source	Gene names
Sma3	GSVIVT00024435001; LOC_Os10g28050; LOC_Os10g28080; LOC_Os10g28120; MtrDRAFT_AC149490g5v2; OSJNBa0061K21.4; OSJNBa0061K21.7; Os10g0416100; Os10g0416500; Os10g0416800; OsI_33576; OsI_33579; OsI_33580; OsI_33583; OsJ_31523; OsJ_31525; OsJ_31527; POPTRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	2S globulin	IPR000677	-	-
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002318148.1	predicted protein [Populus trichocarpa]	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT96

Fln msg: Overlapping hits, possible frame ERROR between 163 and 153, your sequence is shorter than subject: 246 - 280

Fln protein: FVIDYSTDSGSPVPTNGNFSIYWDTGNLNPQAVQAIKAKHKNVKVALSVGxxxxxNGQPVEFKPSSVSSWVNNAVSSLSKIIEEYHLDGIDIDYEHFQASNDTFAECIGQLITRLKQSGAISFASIAPYDNEEVQSHYLALWNKYGHVIDYINFQFYAYDSSTTIAQFKEYYNTQESQYTGGKVLVSFSSATGGGGLLPVNGFFEACKMLKQDGKLEGIFVWCADWSKANGFKYEIESQDLLTAS*

Protein Length: 247

Fln nts: CTTCGTCATCGACTACTCCACGGATTCCGGATCCCCTGTTCCCACAAACGGAAACTTCAGTATCTACTGGGACACCGGCAATCTTAACCCGCAGGCCGTGCAGGCCATAAAGGCCAAACACAAGAATGTGAAGGTCGCTCTCAGCGTAGGCxxxxxxxxxxxxxxxAACGGGCAGCCCGTGGAGTTCAAGCCATCGTCGGTGTCTTCCTGGGTAAACAACGCAGTCTCCTCACTGTCGAAAATTATCGAAGAATACCATCTTGATGGTATCGACATCGACTACGAGCATTTTCAAGCAAGCAATGATACATTTGCAGAGTGTATCGGGCAGCTGATAACGAGGTTAAAGCAGAGCGGCGCCATCTCCTTCGCCTCCATCGCCCCCTATGATAATGAGGAAGTTCAGTCGCATTACCTGGCCCTGTGGAACAAATATGGGCATGTGATAGACTACATTAATTTCCAATTCTATGCCTACGATTCCAGCACCACGATTGCACAGTTCAAAGAATACTACAATACCCAGGAGTCTCAGTATACCGGAGGGAAAGTACTGGTTAGTTTTAGTTCAGCTACTGGCGGTGGAGGTCTCTTGCCTGTGAATGGCTTCTTTGAGGCGTGCAAGATGCTGAAGCAGGATGGGAAATTGGAGGGCATCTTTGTGTGGTGTGCAGACTGGTCGAAGGCTAATGGTTTCAAATATGAAATAGAATCTCAAGATCTCTTGACTGCATCATGATTGCTACTTGTTATCAATCATTAGTCCATTGTATTAGGATGGTAGGATCAGCATGGGTTTAAGGCGATAAAAGGAGGAATATTGTTTGGTTAACTCCGTATTTACTATTTTCATTTTCAGCCCCAAATCTATTAGTGTTTTTCATTTGATCGCTCTGTGCTATTCATAAATCCAGAATTAGTGGATTTATAGATGGTTCTTTTTGTTTAAATGCATTAATTAGAGGACGCAGTTCCCATTATGGCCAT

Fln Alignment:

Contig36197___FVIDYSTDSGSPVPTNGNFSIYWDTGNLNPQAVQAIKAKHKNVKVALSVGxxxxNGQPVEFKPXXXXXXXXXXXXXXXKIIEEYHLDGIDIDYEHFQASNDTFAECIGQLITRLKQSGAISFASIAPYDNEEVQSHYLALWNKYGHVIDYINFQFYAYDSSTTIAQFKEYYNTQESQYTGGKVLVSFSSATGGGGLLPVNGFFEACKMLKQDGKLEGIFVWCADWSKANGFKYEIESQDLLTA
A9NT96_______________FAIDYTTESGSPVPTDGNFNIFWDTGNLSPEAVQAIKAQHTNVKVALSLGxxxxDSQPAEFKPSSVSSWVDNAVSSLSKIIEEYHLDGIDIDYEHFQANNDTFAECIGQLITRLKQSNAISFASIAPYDDQEVQSHYLALWNKYEHVIDYVNFQFYAYDSSTTISQFIGYYNTQASQYSGGKVLVSFSSATGAGGLLPENGFFEACRMLKQNGELKGIFVWCADWSKANGFKYEIESQDLLAS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
828		20	20	60	0.99255
832	25	75			0.996473
833	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain