SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36159

Length: 968 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36159 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucuronosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SVU6_RICCO	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Putative UDP-glucosyltransferase	-	-	1.857e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Anthocyanidin 3-O-glucosyltransferase.	EC:2.4.1.115	-	9.031e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Anthocyanin biosynthesis	00942		9.031e-09	%
Sma3	Metabolic pathways	01100		9.031e-09	%
Sma3	Biosynthesis of secondary metabolites	01110		9.031e-09	%
Sma3	Indole-3-acetate beta-glucosyltransferase.	EC:2.4.1.121	-	4.982e-06	-

Source	Gene names
Sma3	AdGt-2; At1g22400; CtGT4; DcT206; DicGT5; F12K8.26; GSVIVT00001990001; GSVIVT00001996001; GSVIVT00008150001; GSVIVT00013563001; GSVIVT00015205001; GSVIVT00015207001; GSVIVT00016234001; GSVIVT00016236001; GSVIVT00016238001; GSVIVT00016241001; GSVIVT0001624

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	trans-zeatin O-beta-D-glucosyltransferase activity	GO:0050403	Molecular Function	-
Sma3	cis-zeatin O-beta-D-glucosyltransferase activity	GO:0050502	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN73

Fln msg: your sequence is shorter than subject: 278 - 501

Fln protein: LYESQKQCKGDYVLVNTFEELEGRDAVTAVPLNGCPALAIGPLFLPHFLEGRDFSSSLWEEEDSCLTWLDMQQPRSVIYVSFGSIAVKSKEQLEQLALGLESSGQPFLWVLRLDIADGQAAVLPDGFEARTKDRAHFVKWAPQRKVLAHTSVGLFLTHSGWNSMLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFEDVDMDDQKVVMKEEIEDVVRRMMKTAEGEKMRDNVLRLKECATKAVLPGGSSFLNLNTFINDMTMNKGLTSKNETM*

Protein Length: 279

Fln nts: CTGTACGAATCGCAGAAGCAATGTAAAGGGGACTACGTACTAGTGAACACATTTGAGGAGCTGGAAGGAAGGGACGCAGTAACAGCAGTCCCTTTGAATGGCTGCCCTGCTCTGGCAATAGGACCTCTCTTTCTTCCACATTTTTTAGAAGGGAGGGATTTCTCCAGCAGCCTGTGGGAGGAGGAGGACAGCTGCCTAACATGGCTAGATATGCAACAGCCGCGATCAGTTATATACGTTTCCTTTGGCAGCATCGCTGTGAAATCAAAGGAACAGCTGGAGCAGCTGGCACTAGGGTTAGAGAGCAGCGGACAACCTTTCTTGTGGGTTCTCCGGTTGGATATCGCAGATGGCCAAGCTGCGGTTTTACCTGACGGCTTTGAAGCACGAACAAAGGATCGGGCACACTTTGTGAAGTGGGCGCCACAGCGGAAAGTCCTTGCCCATACTTCGGTGGGATTGTTCCTCACGCACAGTGGATGGAATTCTATGTTGGAGAGTATGAGCATGGGAGTTCCCGTAGTGGGATTCCCATATTTTGGCGATCAGTTTCTCAACTGCAGATTCGCGAAGGAGGTGTGGAAGATCGGCTTGGATTTTGAAGATGTGGATATGGATGACCAAAAGGTAGTGATGAAAGAAGAGATTGAGGATGTTGTGAGGAGAATGATGAAAACAGCGGAAGGAGAGAAGATGAGAGACAACGTTCTCAGACTCAAGGAGTGTGCAACAAAGGCCGTGCTCCCTGGAGGATCGTCTTTCCTGAATTTAAACACTTTCATTAATGACATGACGATGAATAAAGGACTCACATCCAAAAATGAAACGATGTGA___TTTGGATTCCAGAAGATGTAACGAAAAGGCTTTGAAAGACTTAGTGTGGTTCTATTTGTATTTGGCTCTCATTACCACGCTCTTTGTATTTTAATCATTATAACATTCATAAATAAATGTCACATCTCATCGAG

Fln Alignment:

Contig36159___LYESQKQCKGDYVLVNTFEELEGRDAVTAVPLNGCPALAIGPLFLPHFLEGRDFSSSLWEEEDSCLTWLDMQQPRSVIYVSFGSIAVKSKEQLEQLALGLESSGQPFLWVLRLDIADGQAAVLPDGFEARTKDRAHFVKWAPQRKVLAHTSVGLFLTHSGWNSMLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFEXXXXXXXXXXXKEEIEDVVRRMMKTAEGEKMRDNVLRLKECATKAVLPGGSSFLNLNTFINDMTMNKGLTSKNETM
B8LN73_______________LYESQKQSKGDYILVNTFEELEGKDAVTALSLNGSPALAIGPLFLSNFLEGRDSCSSLWEEEECCLTWLDMQQPGSVIYVSFGSIAVKSEQQLEQVALGLEGSGQPFLWVLRLDIAEGQAAILPEGFEERTKKRALFVRWAPQAKVLAHASVGLFLTHSGWNSTLESMSMGVPVVGFPYFGDQFLNCRFAKEVWKIGLDFEDVDLDDQKVVMKEEVEGVLRRMMSTPEGKKMRDNVLRLKESAAKAVLPGGSSFLNLNTFVKDMTMSKGLQSKNETM

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
780			85	14	0.993533
833			25	75	0.996473
835			75	25	0.996473
836	75			25	0.996473
837	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
781	792	TCC TCC TCC TCC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain