SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36126

Length: 908 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36126

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.506e-37	-

Source	Gene names
Sma3	At2g05390; At2g15650; At2g23330; B1003C08.12; B1065G12.28; B1110B01.13; B1110B01.4; F11I4_21; F28H19.6; Fourf gag/pol; H0512B01.3; H0512B01.8; LOC_Os03g05850; LOC_Os03g06540; LOC_Os03g20080; LOC_Os03g30860; LOC_Os03g31134; LOC_Os03g33640; LOC_Os03g41000;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	GPI biosynthesis protein Pig-F	IPR009580	-	-
Sma3		IPR010256	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 294 - 363

Fln protein: MDVTYDCELNLSTDFEPTSFKEAASHDGWKEAMQKGYDALIKNGTWTLVDPPLGTKPIGCKWFYKIKYKADGSLDKHKARLVAKGFAQKEGVDYEETFAPTAKWATIRTLFALAAQNGWKVHQMDVKTAFLNGDLKENVFMSQPEGFAVKGHEHKVCKLVKSLYGLKQAPRAWYEKLTEHLLKLNFNHFDLDDATLFVKKVGKIVVYLVVCVDDHLMTGNNESYIASIKKELGRSFEMTDLGYVHYYLGIKVIQHPKSIFHLQKKYIGDLLNRFGMTKCNPLTTPMEQNLKLTS

Protein Length: 295

Fln nts: TAGATGACTCTAATTCACCTGTTGAT_-_ATGGATGTTACTTATGATTGTGAATTGAACTTGTCTACAGATTTTGAACCAACTTCCTTCAAAGAAGCTGCTTCTCATGATGGATGGAAAGAAGCGATGCAAAAGGGGTATGATGCCTTGATAAAGAATGGCACTTGGACGCTGGTTGATCCTCCATTGGGAACCAAACCAATTGGCTGCAAGTGGTTCTACAAGATCAAGTATAAAGCTGATGGATCACTTGATAAGCACAAAGCCAGGCTTGTGGCGAAAGGTTTTGCACAGAAGGAAGGGGTCGATTATGAGGAAACTTTTGCTCCCACAGCGAAATGGGCCACCATCCGGACACTCTTTGCACTAGCAGCTCAGAACGGTTGGAAAGTCCATCAAATGGATGTAAAAACTGCCTTCTTGAATGGAGATCTAAAAGAGAATGTTTTTATGTCCCAGCCTGAAGGATTTGCTGTGAAAGGACATGAACATAAAGTATGCAAACTTGTGAAGTCCTTGTATGGCCTCAAACAAGCACCACGAGCCTGGTATGAAAAACTAACTGAGCATCTTCTGAAACTCAACTTCAATCATTTTGATCTTGATGATGCAACTTTATTTGTCAAGAAAGTTGGCAAAATAGTTGTATATCTTGTGGTATGTGTAGATGATCATTTAATGACAGGGAACAATGAAAGCTATATTGCATCCATAAAGAAGGAATTGGGGAGAAGTTTTGAAATGACTGATTTGGGCTATGTTCATTACTATCTTGGCATTAAAGTAATCCAACATCCAAAGTCCATATTTCATTTGCAAAAGAAATACATTGGAGATTTGTTAAACAGATTTGGCATGACAAAGTGCAATCCTCTTACTACTCCAATGGAACAAAACTTAAAGCTCACATCT

Fln Alignment:

Contig36126___MQKGYDALIKNGTWTLVDPPLGTKPIGCKWFYKIKYKADGSLDKHKARLVAKGFAQKEGVDYEETFAPTAKWATIRTLFALAAQNGWKVHQMDVKTAFLNGDLKENVFMSQPEGFAVKGHEHKVCKLVKSLYGLKQAPRAWYEKLTEHLLKLNFNHFDLDDATLFVKKVGKIVVYLVVC--VDDHLMTGNNESYIASIKKELGRSFEMTDLGYVHYYLGIKVIQHPKSIFHLQKKYIGDLLNRFGMTKCNPLTTPMEQNLKLT
B8LKV8_______________MNKEMESIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIR-STSEPTLYT-KVNEQGQILIVCLYVDDLIYTGN--LTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
455	40		60		1.0
469		75		25	0.996473
501		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain