SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36042

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene36042
TGAACTGATCCCACAACAAGGTCGTATGTTGGAGCTTGAGCGGTATAAAATGATTTGCCATGAGCAGGGTGACGGATATTATGACTCTTTCAAGAACCGAACTGACGTGGACTATGGTGACAGTAAGACTAATTTACTGAGGGTAACGCTAAATGAATTCTGGGATGGGATTATAATTGGAATCTGTAACAGTCGCTCGTTGCCAAGTGATTTCCAATCCCAAAATAAGTGGATAAATGCTGGCAATGACTATAGAAAACTTGTGGAGCCTCTGGATATTGCCCGATATTATAGCATATCTAAGGGTAAAGGCAACTATCTTTCAGATGGAAGACCCAA

Ace file of the UniGene sp_v3.0_unigene36042

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Putative uncharacterized protein	-	-	2.176e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307051.1	PAD4 [Populus trichocarpa]	4.0e-22	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLY7

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 112 - 617

Fln protein: ELIPQQGRMLELERYKMICHEQGDGYYDSFKNRTDVDYGDSKTNLLRVTLNEFWDGIIIGICNSRSLPSDFQSQNKWINAGNDYRKLVEPLDIARYYSISKGKGNYLSDGRP

Protein Length: 113

Fln nts: TGAACTGATCCCACAACAAGGTCGTATGTTGGAGCTTGAGCGGTATAAAATGATTTGCCATGAGCAGGGTGACGGATATTATGACTCTTTCAAGAACCGAACTGACGTGGACTATGGTGACAGTAAGACTAATTTACTGAGGGTAACGCTAAATGAATTCTGGGATGGGATTATAATTGGAATCTGTAACAGTCGCTCGTTGCCAAGTGATTTCCAATCCCAAAATAAGTGGATAAATGCTGGCAATGACTATAGAAAACTTGTGGAGCCTCTGGATATTGCCCGATATTATAGCATATCTAAGGGTAAAGGCAACTATCTTTCAGATGGAAGACCCAA

Fln Alignment:

Contig36042___ELIPQQGRMLELERYKMICHEQ-GDGYYDSFKNRTDVDYGDSKTNLLRVTLNEFWDGIIIGICNSRSLPSDFQSQNKWINAGNDYRKLVEPLDIARYYSISKGKGNYLSDGRP
B8LLY7_______________ELSEKQCIMAELEWYKERCEKEVGITYYDSFRKHKDVD-----ANLCRVRLAEFWDKII-EMWERHELPSDFQSQNKWINAGTAYRRLVEPLDIAHYYRMCKGKGNYLSDGRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain