SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36041

Length: 1282 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36041

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] dbj\|BAB08749.1\| carbonyl reductase-like protein [Arabidopsis thaliana] gb\|AAV74232.1\| At5g51030 [Arabidopsis thaliana] gb\|AAW39010.1\| At5g51030 [Arabidopsis thaliana] gb\|AED9602	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51030.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:20747862-20749352 REVERSE LENGTH=314	59%
RefSeq	Arabidopsis thaliana	NP_199916.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318788.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTM0

Fln msg: your sequence is longer than subject: 316 - 275

Fln protein: MIMGRQNRSFERRQRRLEEIAEARAVPYSGPNRWWSTDTLAVVTGSNKGIGLEIVRQLAKQGLTIVLTSRDQVRGQEVLESLQTEGLNVVFHQLDIVDPKSVELFSNWIEEQYGGIDILVNNAGVNFNTGSSNSVEYAETVIQTNYYGTKRMTESMLPLMKPSSASARVLNVSSRLGRLNGRRNKIGDKLLRNQLEDDEHLTEALIDTTVQCFMEQIREGTWVSGGWPQIFTDYSVSKLAVNAYTRFLARRLSGRPEGHKIYVNCYCPGWVKTDMTGWEGNITAEEGADTGVWTVLLPPESLSGKFFAERREIRF*

Protein Length: 317

Fln nts: TATTTCTTGTTCAGGTCACACGACATGCCGGATTTCAACTCTTGGATATGCGAAAAATCTTGATTTTCACATGTTCGCCAAGTATTTTTTGAATACCGACCTCTCAGACACAGGTTCTCTAATACATTCCCATTTTATCTCTGCAGCTTATGGCAGCAAGGGGCAAACTGGCTGACAC_-_ATGATAATGGGTAGACAAAATCGCTCCTTCGAACGGAGACAAAGGAGATTGGAAGAGATAGCTGAAGCCCGTGCTGTACCATACTCTGGTCCAAACAGATGGTGGTCCACAGATACACTAGCAGTAGTGACCGGAAGTAACAAAGGAATTGGACTTGAAATTGTTCGACAACTTGCAAAGCAGGGCCTGACCATTGTTCTCACTTCAAGGGATCAGGTTAGGGGACAGGAAGTGCTGGAATCCTTACAGACAGAGGGACTTAATGTGGTTTTCCATCAATTAGACATTGTGGATCCAAAATCGGTGGAGCTGTTTTCCAATTGGATAGAAGAGCAATATGGTGGCATTGACATTCTGGTAAATAATGCAGGTGTCAATTTTAATACTGGCTCGAGCAACTCAGTGGAATATGCAGAGACTGTGATACAAACAAATTATTATGGTACTAAAAGAATGACAGAGTCTATGCTTCCTCTTATGAAACCTTCCTCAGCAAGTGCTCGAGTACTGAATGTCAGCTCACGACTTGGAAGGCTAAATGGAAGGCGCAATAAAATTGGTGACAAGTTGCTAAGAAATCAACTTGAAGACGATGAGCATCTTACTGAAGCACTGATTGACACTACCGTTCAATGTTTTATGGAACAAATTAGAGAAGGGACATGGGTATCTGGTGGTTGGCCACAAATTTTCACAGATTATTCAGTCTCAAAATTAGCTGTCAATGCTTATACTCGTTTTCTTGCAAGGAGGCTTTCTGGTCGTCCGGAAGGTCACAAGATCTATGTGAACTGTTACTGTCCTGGCTGGGTCAAGACTGATATGACTGGTTGGGAAGGTAACATAACAGCGGAAGAAGGTGCAGATACAGGAGTATGGACAGTCTTGCTACCTCCTGAATCACTTTCAGGAAAGTTTTTTGCTGAAAGGCGTGAAATACGCTTCTGA___ATTAGCCTATGATTTATCCTAGTACCCTATACTTCACTGACTCCAAAAAAAGTTTGTTCTCACTGATTGTAGGGTGTCAACATTATGAGATATTAACTAAAGGATCGTTTGGATCTATTTTTTTGAATGAAACATCTAATAGCAGATTTCTACAGC

Fln Alignment:

Contig36041___IAEARAVPYSGPNRWWSTDTLAVVTGSNKGIGLEIVRQLAKQGLTIVLTSRDQVRGQEVLESLQTEGLNVVFHQLDIVDPKSVELFSNWIEEQYGGIDILVNNAGVNFNTGSSNSVEYAETVIQTNYYGTKRMTESMLPLMKPSSASARVLNVSSRLGRLNGRRNKIGDKLLRNQLEDDEHLTEALIDTTVQCFMEQIREGTWVSGGWPQIFTDYSVSKLAVNAYTRFLARRLSGRPEGHKIYVNCYCPGWVKTDMTG
A9NTM0_______________IAEARAVPYSGPNRWWSTDTLAVVTGSSKGIGLEIVQQLAKQGLTIVLTSRDQARGQEVVASLQTEGLNVVFHQLDIVDPKSVALFSKWIGEQYGGIDILVNNAGVNFNTGSSNSVEYAETVIQTNYYGTKRMTEYMLPLMKPSSASARVLNVSSRLGRLNGRHNKIGDELLRNQLEDDEHLTEELIDTTVQSFMEQIREGTWVSGGWPQIFTDYSVSKLAVNAYTRFLARRLSDRPEGHKIYVNCYCPGWVKTDMTG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
774	75	25			1.0
884		10	90		0.90298
1185	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain