SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35914

Length: 893 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene35914 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydropinosylvin synthase n=6 Tax=Pinus RepID=DPSS_PINSY	-	-	97%
FL-Next	tr=Pinosylvin synthase; Pinus densiflora (Japanese red pine).	-	-	98%
Sma3	Chalcone synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Naringenin-chalcone synthase.	EC:2.3.1.74	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Flavonoid biosynthesis	00941	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	C2; CHS; CHS-1A; CHS-1B; CHS-A; CHS-C; CHS-D; CHS-DII; CHS-DIII; CHS-DIV; CHS-LF1; CHS-LF2; CHS-LF3; CHS-LF4; CHS-P; CHS1; CHS11; CHS17; CHS1B; CHS2; CHS3; CHS4; CHS4-1; CHS4-2; CHS5; CHS6; CHS6-4; CHS7; CHS8; CHS9; CHSA; CHSD; CHSI; CHSII; CHSJ; CSF7; Ch

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3		GO:0008415	Molecular Function	-
Sma3	naringenin-chalcone synthase activity	GO:0016210	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13930.1	CHS, TT4, ATCHS Chalcone and stilbene synthase family protein chr5:4488762-4490035 FORWARD LENGTH=395	69%
RefSeq	Arabidopsis thaliana	NP_196897.1	chalcone synthase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002337752.1	chalcone synthase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9MBF1

Fln msg: your sequence is shorter than subject: 273 - 393

Fln protein: QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGVVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLISTRHVMSEYGNMSSACVHFILDETRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVPLQ*

Protein Length: 274

Fln nts: GCAGTCCAAGTCTCGGATCACTCATCTCATATTTTGCAGCACAACGACTCCGGATCTACCCGGAGCAGACTTTGAGGTAGCCAAGTTGCTGGGGCTGCACCCGAGTGTGAAGAGAGTGGGCGTGTTCCAACATGGCTGCTTCGCCGGAGGCACCGTTCTTCGAATGGCGAAAGACCTTGCCGAAAACAATCGAGGAGCTCGGGTGCTGGTCATCTGCAGTGAAACCACCGCCGTCACCTTCCGTGGACCCTCCGAGACTCACCTGGACAGCTTGGTGGGGCAAGCTCTGTTCGGCGACGGTGCTTCTGCCCTCATCGTGGGAGCTGATCCCATCCCTCAAGTGGAGAAGGCCTGTTTCGAAATCGTTTGGACAGCCCAGACAGTTGTTCCCAACAGCGAGGGAGCCATCGGTGGGAAGGTGAGAGAGGTCGGACTGACCTTCCAACTCAAAGGCGTGGTTCCGGATCTAATCTCTGCCAACATTGAAAACTGTCTGGTGGAGGCGTTCAGTCAATTCAAAATATCCGATTGGAACAAGTTGTTCTGGGTTGTTCATCCCGGAGGACGTGCCATCCTTGATCGGGTGGAGGCTAAGCTCAATCTGGATCCCACAAAACTGATATCCACCAGGCACGTTATGAGCGAGTACGGAAACATGTCTAGTGCGTGCGTCCACTTCATATTGGATGAGACGAGGAAAGCGTCTCTACAAAATGGTTGTTCAACCACCGGAGAGGGATTGGAAATGGGAGTCCTGTTTGGATTCGGGCCAGGCCTCACCATCGAAACAGTGGTTCTTAAGAGCGTTCCCCTTCAATAA___AATTTTAACAACTAAACTTTCAGACATAAATGCAACAGCTAAGCTTTAGAATAAATAAATGTGAGCAGTTTCT

Fln Alignment:

Contig35914___QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGVVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLISTRHVMSEYGNMSSACVHFILDETRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVPLQ
Q9MBF1_______________QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPDSEGAIGGKVREVGLTFQLKGAVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTSGEGLEMGVLFGFGPGLTIETVVLKSVPLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain