SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35901

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene35901
TATCTATCCCTCCTGTGGTGTTGGAAGCCTGTATCGCGATGCCCAAATTCTTGAAGCCAGGCAAGGTCGTAATTGTCCTCAACGGTAGATACGCCGGTAAGAAGGCTGTCATCGTCCAGAACTTCGATGATGGTAGCAAGACCCACCCTACCCCCACGCTACTATTGCTGGCGTTGAGAGGTACCCCAGAAAGATCACCAAGCAGATGGGCACCAAAAAAATGAACCGCAGATCCAAGCTGAAGTCTTTCGTCAAGGTCATCAACTACAGCCACTTGATGCCCACTAGGTATGGTCTCGATATTGACCTCAAGCCCGTGTTCAAGGAGGGTGCCTTGGAGAAGGGTCAAAGACCTAAGACAAGAATGGCCGTTAAGAGAATTTTCCAGGCCAGGTACAACGCCGGAAAGAACAAGTGGTTCTTCTCCAAGCTCAGGTTCTAAGCACATGTGGTTTCCTGCATTATATTTAAATCAAAGGCTAGAAGAAAGAAATAAAACGGGTTGTTCAACAC

Ace file of the UniGene sp_v3.0_unigene35901

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L27 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CH78_9EUKA	-	-	2.0e-40	63%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L27e	IPR001141	-	0.0	-
Sma3	Ribosomal protein L27e, conserved site	IPR018262	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323180.1	predicted protein [Populus trichocarpa]	8.0e-33	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABK8

Fln msg: Separated hits, possible frame ERROR between 137 and 149,

Fln protein: MPKFLKPGKVVIVLNGRYAGKKAVIVQNFDDGxxxxxYPHATIAGVERYPRKITKQMGTKKMNRRSKLKSFVKVINYSHLMPTRYGLDIDLKPVFKEGALEKGQRPKTRMAVKRIFQARYNAGKNKWFFSKLRF*

Protein Length: 136

Fln nts: TATCTATCCCTCCTGTGGTGTTGGAAGCCTGTATCGCG_-_ATGCCCAAATTCTTGAAGCCAGGCAAGGTCGTAATTGTCCTCAACGGTAGATACGCCGGTAAGAAGGCTGTCATCGTCCAGAACTTCGATGATGGTAGxxxxxxxxxxxxCTACCCCCACGCTACTATTGCTGGCGTTGAGAGGTACCCCAGAAAGATCACCAAGCAGATGGGCACCAAAAAAATGAACCGCAGATCCAAGCTGAAGTCTTTCGTCAAGGTCATCAACTACAGCCACTTGATGCCCACTAGGTATGGTCTCGATATTGACCTCAAGCCCGTGTTCAAGGAGGGTGCCTTGGAGAAGGGTCAAAGACCTAAGACAAGAATGGCCGTTAAGAGAATTTTCCAGGCCAGGTACAACGCCGGAAAGAACAAGTGGTTCTTCTCCAAGCTCAGGTTCTAA___GCACATGTGGTTTCCTGCATTATATTTAAATCAAAGGCTAGAAGAAAGAAATAAAACGGGTTGTTCAACAC

Fln Alignment:

Contig35901___MPKFLKPGKVVIVLNGRYAGKKAVIVQNFDDGSxxxxYPHATIAGVERYPRKITKQMGTKKMNRRSKLKSFVKVINYSHLMPTRYGLDIDLKPVFKEGALE-KGQRPKTRMAVKRIFQARYNAGKNKWFFSKLRF
D5ABK8_______________MVKFLKQNKVVVLLQGRFAGRKAVIVKNFDDGTxxxxYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRLKAFIKVVNYNHIMPTRYSLDVDLKNVVTFDKLETRDKKVAALKGVKASFEERFKAGKNRWFFTKLRF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
352	71		28		1.0
373		28		71	1.0
445	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain