SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35880

Length: 518 nt

UniGene Fasta

>sp_v3.0_unigene35880
GGATCAGAGGCCATGAATTCGATGCGCATGAACATCTACCCTGCTTGCCCTAGACCAGATCTTGTTCTCGGATTGAGTCCTCACGCAGATGGAGGGGGGCTAACATTGCTTCTGCAGGATGACGAAACAGTAGGCTTGCATGTCCGGAAGAACAATCAATGGATTCCTGTCGAGCCCATTCCTTATGCCTTTGTTATAAACATTGGAGACATAATAGAGGTAATGACAAATGGGAAGTACAAAAGCATAGAACATCGGGCAGTAACAAACAAGGAGAGAGCGAGACTTTCTATCGCTAATTTCTACAATGCAAGTGTGGATGCAGAGGTGGCTCCATCAGCAAAGCTAGTGGATGAACACCACCCATGCTTGTACAGGCAGTTCATTCACAAAGATTACATTCTCTATCACCTCTCAAAGCCACTCAAAGGGAAACGACACCTTGCAGAGTTTGCCAAACTTGACATCAGCAACACCTGAACCTCACCCTTGTGATTTCAACATTACTTAAAAGAGTG

Ace file of the UniGene sp_v3.0_unigene35880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-forming enzyme n=1 Tax=Picea glauca RepID=Q40839_PICGL	-	-	1.4013e-45	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Leucoanthocyanidin dioxygenase, putative	-	-	6.783e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonol synthase.	EC:1.14.11.23	-	4.185e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	4.185e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.185e-21	%
Sma3	Metabolic pathways	01100	4.185e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	4.185e-21	%

Source	Gene names
Sma3	ACCO; ACO; ACO2; ANS; AT4g25300; AT4g25310; At1g17010/F20D23_29; At1g17020; At3g11180; At3g21420; At4g25300; At4g25310; At5g05600; EFE; EFEMR2; F11B9.11; F20D23.28; F20D23.29; F24A6.140; F24A6.150; F6I1.30; F9F8.3; GSVIVT00000476001; GSVIVT00003362001; GS

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	1-aminocyclopropane-1-carboxylate oxidase activity	GO:0009815	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	ethylene biosynthetic process	GO:0009693	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	organ senescence	GO:0010260	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr3:7541579-7543221 FORWARD LENGTH=364	54%
RefSeq	Arabidopsis thaliana	NP_566685.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002315563.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg: your sequence is shorter than subject: 160 - 373

Fln protein: GSEAMNSMRMNIYPACPRPDLVLGLSPHADGGGLTLLLQDDETVGLHVRKNNQWIPVEPIPYAFVINIGDIIEVMTNGKYKSIEHRAVTNKERARLSIANFYNASVDAEVAPSAKLVDEHHPCLYRQFIHKDYILYHLSKPLKGKRHLAEFAKLDISNT*

Protein Length: 161

Fln nts: GGATCAGAGGCCATGAATTCGATGCGCATGAACATCTACCCTGCTTGCCCTAGACCAGATCTTGTTCTCGGATTGAGTCCTCACGCAGATGGAGGGGGGCTAACATTGCTTCTGCAGGATGACGAAACAGTAGGCTTGCATGTCCGGAAGAACAATCAATGGATTCCTGTCGAGCCCATTCCTTATGCCTTTGTTATAAACATTGGAGACATAATAGAGGTAATGACAAATGGGAAGTACAAAAGCATAGAACATCGGGCAGTAACAAACAAGGAGAGAGCGAGACTTTCTATCGCTAATTTCTACAATGCAAGTGTGGATGCAGAGGTGGCTCCATCAGCAAAGCTAGTGGATGAACACCACCCATGCTTGTACAGGCAGTTCATTCACAAAGATTACATTCTCTATCACCTCTCAAAGCCACTCAAAGGGAAACGACACCTTGCAGAGTTTGCCAAACTTGACATCAGCAACACCTGA___ACCTCACCCTTGTGATTTCAACATTACTTAAAAGAGTG

Fln Alignment:

Contig35880___GSEAMNSMRMNIYPACPRPDLVLGLSPHAXXXXXXXXXXXXETVGLHVRKNNQWIPVEPIPYAFVINIGDIIEVMTNGKYKSIEHRAVTNKERARLSIANFYNASVDAEVAPSAKLVDEHHPCLYRQFIHKDYILYHLSKPLKGKRHLAEFAKLDI
A9NW44_______________GSEPTNLMRMNLYPPCPRPDLVLGLSPHSDGGGITLLLQDDQTEGLHVRKNNQWIPVQPIPYALVVNIGDLVEVMTNGRYKSVEHRAVTSQERARLSVALFYSAGIDAEVAPSSKIVDEDQQLLYRKFIHEEYIRYYLSRQLKGKHPLADFAKLDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain