SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35800

Length: 551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene35800
CGACGAAGCTTGAAGGAGGCCTTGCCCGGTGACAATGTCGGGTTCAACATTAAGAACGTCTCCGTCAAGGAAATTCGTCGTGGTAATGTTGCTGGCGACTCCAAGAACGATCCTCCTTTCGGCGCTGCGGACTTCACTGCTCAAGTCATCGTCTTGAATCATCCTGGTGAGATCCGTCAAGGATACACCCCTGTGCTCGATTGTCACACTGCCCACATTGCTTGCCGTTTCGCTGATATCCAACAAAAGATTGATCGTCGTACCGGTAAGGCCACTGAGGAGACCCCCAAGTGCATCAAGACTGGTGATGCCGCTATGGTCCGCCTCGAGCCAACCAAGCCCCTCTGCGTTGAGACCTTCAAGGATTATCCTCCTCTTGGTCGATTCGCCGTCCGTGATATGAGACAAACCGTTGCCGTCGGTGTCATCAAGGGTGTTACCAAGAAGGAAGCTGGCAAAGAAGGTGCTGCCCCAGGCAAGGCAACCAAGGCTGCTGCCAAGACAACTAAGAAATAAGAAACTTTTGAATAAAGGGATTGGTGTATTTGCCC

Ace file of the UniGene sp_v3.0_unigene35800 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=2 Tax=Formicidae RepID=E2B5C8_9HYME	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Sma3	Elongation factor 1-alpha	-	-	-

Source	Gene names
Sma3	A1; A2; A3; A4; AT1G07930; AT1G07940; AT5G60390; AcoEF1a; At1g07920; At1g07920/T6D22.2; At1g07930; At1g07940; At5g60390; BLT63; EF-1; EF-1-alpha; EF-1-alpha1; EF-1alpha; EF1; EF1-A; EF1-a; EF1-a1; EF1A; EF1A1; EF1A2; EF1A3; EF1A4; EF1A5; EF1A6; EF1A7; EF1

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	69%
RefSeq	Arabidopsis thaliana	NP_001030993.1	Elongation factor 1-alpha [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002312029.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMD8

Fln msg: atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning,

Fln protein: RRSLKEALPGDNVGFNIKNVSVKEIRRGNVAGDSKNDPPFGAADFTAQVIVLNHPGEIRQGYTPVLDCHTAHIACRFADIQQKIDRRTGKATEETPKCIKTGDAAMVRLEPTKPLCVETFKDYPPLGRFAVRDMRQTVAVGVIKGVTKKEAGKEGAAPGKATKAAAKTTKK*

Protein Length: 173

Fln nts: CGACGAAGCTTGAAGGAGGCCTTGCCCGGTGACAATGTCGGGTTCAACATTAAGAACGTCTCCGTCAAGGAAATTCGTCGTGGTAATGTTGCTGGCGACTCCAAGAACGATCCTCCTTTCGGCGCTGCGGACTTCACTGCTCAAGTCATCGTCTTGAATCATCCTGGTGAGATCCGTCAAGGATACACCCCTGTGCTCGATTGTCACACTGCCCACATTGCTTGCCGTTTCGCTGATATCCAACAAAAGATTGATCGTCGTACCGGTAAGGCCACTGAGGAGACCCCCAAGTGCATCAAGACTGGTGATGCCGCTATGGTCCGCCTCGAGCCAACCAAGCCCCTCTGCGTTGAGACCTTCAAGGATTATCCTCCTCTTGGTCGATTCGCCGTCCGTGATATGAGACAAACCGTTGCCGTCGGTGTCATCAAGGGTGTTACCAAGAAGGAAGCTGGCAAAGAAGGTGCTGCCCCAGGCAAGGCAACCAAGGCTGCTGCCAAGACAACTAAGAAATAA___GAAACTTTTGAATAAAGGGATTGGTGTATTTGCCC

Fln Alignment:

Contig35800___SLKEALPGDNVGFNIKNVSVKEIRRGNVAGDSKNDPPFGAADFTAQVIVLNHPGEIRQGYTPVLDCHTAHIACRFADIQQKIDRRTGKATEETPKCIKTGDAAMVRLEPTKPLCVETFKDYPPLGRFAVRDMRQTVAVGVIKGV
B8LMD8_______________ALLEASPGDNVGFNVKNVAVKDLKRGFVASDSKNDPAREAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIMTKVDRRSGKELEREPKFLKNGDAGFIKMIPSKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain