SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35705

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene35705
GTATCTGTGGTTCGGATTTCAAGCACAAAAGGTCACTCAAGGATCACATAAGAGCATTCGGTCATGGCCATGCTCCTCATCATGGAGATCTGCACACTTTTGAAGATGAGGACCCCGCCTCTGAAATTGAACAGGACGATGAAACGCAGTGACCCATACCAGCAAAATTATGATCTGATCCCATGTACGGATAAAGTAGGTTCCATGTTTATAACTTCTTATCTTAATCATGTACTCTGAAAGCAACTAGGCACACCCTGCTAACTAACAAAATACTGCTATTTCTGTTGTCAAACACCCCTTTGCTAATAAGCATTTCTGGATTTAGATGAATGTACAGATGCATTAGACTACTCCAGCAGATCTGAATATGCAGTAGACTTTCAGACAAATATCTCAATATGAAGATTTGCTACCGCGTATTGATGAAGCACCCAGTAGTTCAGGTCCTCATTCAGATGTTCCTTTAGAAGGCCACTTCACTCACATATATTCCTCTTGACCATAGTGCTTGCAATGCAATACCACTAGCTTAGTAAG

Ace file of the UniGene sp_v3.0_unigene35705 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	TRANSPARENT TESTA 1 protein, putative	-	-	1.632e-12	-

Source	Gene names
Sma3	At3g57670; F15B8.140; GSVIVT00024637001; GSVIVT00025545001; GSVIVT00028820001; GSVIVT00030295001; OSJNBa0017N10.14; OsI_30809; OsJ_28788; PHYPADRAFT_143486; POPTRDRAFT_1074580; POPTRDRAFT_200378; POPTRDRAFT_202805; POPTRDRAFT_777162; RCOM_0090910; RCOM_12

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57670.1	NTT, WIP2 C2H2-type zinc finger family protein chr3:21370936-21373121 FORWARD LENGTH=383	4.0e-12	69%
RefSeq	Arabidopsis thaliana	NP_191326.1	C2H2-type zinc finger protein [Arabidopsis thaliana]	5.0e-12	69%
RefSeq	Populus trichocarpa	XP_002304767.1	predicted protein [Populus trichocarpa]	2.0e-14	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: your sequence is shorter than subject: 50 - 225

Fln protein: ICGSDFKHKRSLKDHIRAFGHGHAPHHGDLHTFEDEDPASEIEQDDETQ*

Protein Length: 51

Fln nts: GTATCTGTGGTTCGGATTTCAAGCACAAAAGGTCACTCAAGGATCACATAAGAGCATTCGGTCATGGCCATGCTCCTCATCATGGAGATCTGCACACTTTTGAAGATGAGGACCCCGCCTCTGAAATTGAACAGGACGATGAAACGCAGTGA___CCCATACCAGCAAAATTATGATCTGATCCCATGTACGGATAAAGTAGGTTCCATGTTTATAACTTCTTATCTTAATCATGTACTCTGAAAGCAACTAGGCACACCCTGCTAACTAACAAAATACTGCTATTTCTGTTGTCAAACACCCCTTTGCTAATAAGCATTTCTGGATTTAGATGAATGTACAGATGCATTAGACTACTCCAGCAGATCTGAATATGCAGTAGACTTTCAGACAAATATCTCAATATGAAGATTTGCTACCGCGTATTGATGAAGCACCCAGTAGTTCAGGTCCTCATTCAGATGTTCCTTTAGAAGGCCACTTCACTCACATATATTCCTCTTGACCATAGTGCTTGCAATGCAATACCACTAGCTTAGTAAG

Fln Alignment:

Contig35705___CGSDFKHKRSLKDHIRAFGHGHAPHHGDLHTFEDEDPASEIEQDDE
A9NQR7_______________CGSDFKHKRSLKDHIRAFGQGHAPIAPD--SFEDEE---DLGSEDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain