SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35659

Length: 1122 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35659

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Reticulon domain containing protein	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46170.1	Reticulon family protein chr2:18965410-18966940 FORWARD LENGTH=255	55%
RefSeq	Arabidopsis thaliana	NP_566065.1	reticulon-like protein B5 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002299504.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPJ1

Fln msg:

Fln protein: MGEHPEEAASFLESVLEKVTEKLPGHDSSSSDSDDEKSKKPQPSSIASSIKRLFGREKPVHSLFGGGKSADVILWRNKQTSAGVLVGATVIWLLFEWLGYHLLTLICHALILGLTILFVWSNASAFINKQPVRIPQISFSEQLFQDVASAVRFEINRLCAFIHDVASGRDLKKFLMVVAGLWLLSVVGSWTNFLTLFYVAFVFAHTVPVLYEKYEDQVDALAFKAMDEAKKHYRTFDAKVLSKIPRGPLKDKKF*

Protein Length: 256

Fln nts: GCACGGCTGAGATTAAGCCAGCGCGCTCAATCAACGGCCTCGTTGAATCTTATGCCCCTGAGCAAAGTATAGCTCCAGAATAGCCTTGTAAATTCATCGGAACCTGGTGGAAAAGCTGTGTAGGAGGAAATCTTGAAGAGAGTGCCATTGTAGATTAAAACGGCCATTGCTGGAGTTTGGCCCAAGTAAACCGAAGGCAGAAGATCCCCATCATCGTCGTATCTCTTTAGGGCTACTTGAAGCCGAGGGACGCTAAGTCTCTGTAACCATCCATTAATTGTGTGGGTCGGAGAGGTTTATTAGTCGAA_-_ATGGGAGAGCATCCAGAGGAGGCAGCGTCTTTTCTGGAGAGTGTGCTGGAGAAGGTCACCGAAAAGCTTCCCGGGCATGACTCCTCTTCTTCCGATTCGGATGATGAGAAATCCAAAAAACCCCAGCCGTCTTCAATTGCATCTTCAATAAAACGTCTCTTTGGCCGCGAGAAGCCCGTCCATTCGCTATTCGGAGGAGGCAAATCTGCGGATGTAATACTATGGAGGAACAAGCAAACCTCAGCAGGTGTTCTTGTGGGTGCTACTGTCATCTGGCTCCTATTTGAGTGGCTTGGTTATCATCTATTGACACTTATTTGCCATGCTCTCATACTTGGCCTCACCATCTTGTTCGTCTGGTCCAACGCATCAGCCTTTATTAACAAACAACCGGTGCGTATCCCTCAGATATCATTTTCTGAACAACTATTTCAGGATGTCGCTTCTGCTGTCAGATTTGAAATCAACCGCTTGTGTGCTTTTATACATGATGTTGCATCTGGGAGAGATTTGAAAAAGTTTCTTATGGTTGTGGCAGGTCTCTGGCTTCTTTCTGTGGTTGGCAGCTGGACTAATTTTTTGACTCTCTTCTATGTTGCATTTGTTTTTGCGCATACAGTGCCTGTGCTTTATGAAAAATATGAAGATCAGGTTGATGCACTTGCATTCAAGGCAATGGATGAAGCTAAGAAGCATTACAGGACTTTTGATGCCAAAGTGTTGAGCAAGATTCCAAGAGGCCCACTGAAAGACAAGAAATTCTAG___ATGCTCTCTTTTAGTTATTATTTATGGTGGTGGTAGAGTGACTACTTTT

Fln Alignment:

Contig35659___MGEHPEEAASFLESVLEKVTEKLPGHXXXXXXXXXXXXXXXXXXX-----IASSIKRLFGREKPVHSLFGGGKSADVILWRNKQTSAGVLVGATVIWLLFEWLGYHLLTLICHALILGLTILFVWSNASAFINKQPVRIPQISFSEQLFQDVASAVRFEINRLCAFIHDVASGRDLKKFLMVVAGLWLLSVVGSWTNFLTLFYVAFVFAHTVPVLYEKYEDQVDALAFKAMDEAKKHYRTFDAKVLSKIPRGPLKDKKF
B8LPJ1_______________MGEHPEEAASFLDSVMEKVAEKLPGHDSSSSDSDDEKSKKPESKKPEPSSISSSVKRLFGREKPVHTLFGGGKSADVILWRNKQTSAGVLAGATVMWLLFEWLGYYLLTLICHVLILGITILFVWSNASAFINKQPVRIPQISFSEQLFQDVASALRFEINRLFTVIHDVASGRDLKKFLMVVAGLWILSVIGSWANFLTLFYVAFVFAHTVPVLYEKYEDQVDAFTFKAMDEAKKHYGTFDAKVLSKIPRGPLKDKKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain