SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35657

Length: 1684 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35657

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	54%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM5

Fln msg:

Fln protein: MSNEELGAAASCVANPRFNGPERRLEGKVAIITGGAAGIGDAIVRLFTKHGAKVIIADIADEAGKNLAESLSPPATYVHCDVTKEEDISAAVDLAMEKHGQLDIMYNNAGTVEFMAPESVAEYKMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIISTASVASIIAGFTPYAYTASKHAIIGLTKNGAAELGKYGIRVNAVSPYGVATALVNMYLKQGNASAISEEEKAAVEAWLNSVANLQGATLKAEDVAEAGLYLASDEAKYVSGHNLVVDGGITVVNHSWKLYR*

Protein Length: 293

Fln nts: GCACGAGGCAGCC_-_ATGTCTAACGAAGAACTTGGTGCAGCGGCTTCTTGTGTTGCCAATCCAAGATTTAATGGACCAGAGCGACGATTGGAGGGCAAGGTAGCAATAATAACAGGTGGAGCAGCGGGCATAGGAGATGCTATCGTTCGGCTCTTCACAAAGCATGGAGCCAAAGTCATAATCGCAGACATTGCAGACGAAGCCGGCAAAAATTTGGCCGAATCCCTTTCTCCTCCGGCAACTTACGTGCACTGTGATGTGACCAAAGAGGAAGACATTAGCGCTGCGGTGGATTTGGCCATGGAGAAACACGGTCAACTCGATATCATGTATAACAACGCAGGAACTGTAGAATTCATGGCGCCTGAAAGCGTGGCAGAGTACAAAATGGAGCAATTCGATCGAGTAATGAGGGTAAACGTGAGAGGAGTGATGTTGGGCATTAAGCACGCGGCCCGCGTGATGATCCCGCGGAAGAAGGGCTGCATAATCTCTACTGCCAGCGTTGCAAGTATCATAGCTGGATTTACTCCATACGCATACACAGCTTCGAAGCATGCGATCATAGGGCTGACTAAGAACGGAGCAGCTGAGCTCGGGAAATACGGGATCAGAGTGAACGCTGTTTCTCCTTATGGCGTGGCCACTGCCCTTGTAAACATGTACCTAAAACAAGGCAATGCTTCGGCTATTTCAGAAGAGGAGAAGGCCGCCGTGGAGGCATGGTTAAATAGTGTTGCCAATTTACAGGGAGCGACTCTTAAAGCAGAGGATGTTGCGGAGGCAGGGCTGTACTTGGCTAGCGATGAGGCTAAATATGTTAGCGGGCATAACCTTGTAGTGGATGGTGGAATCACAGTTGTTAACCATTCTTGGAAGCTCTACCGTTGA___TAGTTCTTACAAGTAATTTTCAGTGAAGCAAGAGAGTCCTAGTACTAGAGTATATAATAATGTCAGTTTAGAGGCAGTATCTCAGAGTCTTCAGCCGTTGTCTGTTTCCATATTATTGTCTGTAGGTGTCATCAAATGTCATGAGGGCTTCGTATGCACTCATCCGCCAGTTTCAGTTTCTACCTGAACGGTACATTGTTTAACACGGAACGTAACTTGTAATCTTACTGTTTAATATTAAATATAACTATTTCACTTTCGTGGAGTCTCGATCGTGGTTGAGTCATAAATTTTCAGTATGTATTGTTTTAAACGGAATCCATGATCCCCAATCACTACAATCTCAACAGGGTGCAGCAGAGCCCCAGGGGATCCTTGTCCGTCAGAGAAGGGGATCATGGTGGCTTTTTATGTAACACTCTTTATCTGCAGGTAAATGAAAATATCCGTTTTGGGGAATCAAGGGATAGTGGGTGGAACAATAGCTACAAATTATGTTACCCATGAACTGCAATTGTGTGAAGAGGCCATCTTGTGCTGAAACGAAGTGATGGAATAACTGCAGGCAGATCCCGATTTATGAATGAGGCAGAACTAATATGCGGACAACAAGGAGGCATTGCTAGCTTTGTCCCTCCATTGAATTTTGCAATGCTAGACAAGGGGGTTTATAGATCAGGTTTCCCCAACCATGCAAACTTTCCATTTCTGAAGACCTTAAAGCTTCGCTCTATAATTTCGCTCTGCCCTGAGCCTTATCCAGGAGTTAATATGGAGTTTCTAAGAGCTGAAGAA

Fln Alignment:

Contig35657___MSNEELGAAASCVANPRFNGPERRLEGKVXXXXXXXXXXXXXXVRLFTKHGAKVIIADIADEAGKNLAESLSPPATYVHCDVTKEEDISAAVDLAMEKHGQLDIMYNNAGTVEFMAPESVAEYKMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCXXXXXXXXXXXXGFTPYAYTASKHAIIGLTKNGAAELGKYGIRVNAVSPYGVATALVNMYLKQGNASAISEEEKAAVEAWLNSVANLQGATLKAEDVAEAGLYLASDEAKYVSGHNLVVDGGITVVNHSWKLYR
A9NUM5_______________MSNEEFNAAASSVGNLSFNGSERRLKGKVAIITGGASGIGEAIVRLFTKHGAKVILADIADEAGRNLAGSLSPPATYVHCDVSKEQDVRAAVDLAMEKHGQLDIMYNNAGTIEFVAVESVAEYEMEQFDRVMSVNVRGAMLGIKHAARVMIPRKKGCIISTASVAGILGGLTPYAYTASKHAILGLTKNGAAELGKYGIRVNTVSPSGVATALLVNYNKQGNGSVVSEEDKAAVEAYCTSIGNLEGATLRAEDIAEAGLYLASDEAKYVSGHNLVVDGGFSVVNHSWKLYR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
760		20		80	0.995493
798		80		20	0.995493
1406	25		75		0.996473
1407		25		75	0.996473
1408	25		75		0.996473
1410			75	25	0.996473
1587	25		75		0.996473
1616		25		75	0.996473
1618		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain