SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35656

Length: 1151 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35656

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR	-	-	0.0	58%
FL-Next	sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Sma3	Rna-dependent RNA polymerase	-	-	6.658e-24	-

Source	Gene names
Sma3	At1g14790; At3g49500; B1074C08.31; GSVIVT00030600001; GSVIVT00030602001; GSVIVT00032651001; NtRDR6; Os01g0527600; Os02g0736200; OsI_02249; OsI_08849; OsJ_02054; OsJ_08301; PHYPADRAFT_219654; PHYPADRAFT_379; POPTRDRAFT_231683; POPTRDRAFT_561891; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49500.1	RDR6, SGS2, SDE1 RNA-dependent RNA polymerase 6 chr3:18349193-18353205 REVERSE LENGTH=1196	57%
RefSeq	Arabidopsis thaliana	NP_190519.1	RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002324295.1	rna-dependent RNA polymerase [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SG02

Fln msg: your sequence is shorter than subject: 369 - 1196

Fln protein: ILEAVDAPSLHHLVDCLVFPQKGDRPHPNEASGSDLDGDTYFVSWDSSLLPPSGKSFEPMDYDAGEAKVSKAPVKTQDIIEFFVQHMVNDKLGVICNAHVVHADLSEIGALDEKCLELAKLAAMAVDFPKTGKVAVLPPHLKPKIYPDFMDKDDFDGYKSDKVLGVLYRRIKDMFGEEVEKWKINAECENVFEELPYDKDLETRGFEEYLEEAWNYKCSYDQQLRALLGQFNVKREGEVVTGRISTLSKLNSRKQGEIKERLQHAYRALRNEFRFIFQGKTDRETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTEPDGYFTSPLLSFPWISVDYLAQIKLQKLCPNVDYSSRVKNFTTVLFGKA*

Protein Length: 370

Fln nts: GGATTCTAGAAGCTGTGGATGCTCCTAGCTTGCATCATTTAGTTGATTGTTTGGTATTCCCACAGAAGGGCGACAGGCCACATCCCAATGAAGCTTCTGGAAGTGATCTTGATGGAGATACATACTTTGTTTCTTGGGACTCTAGCCTTCTACCCCCAAGTGGCAAAAGTTTCGAACCAATGGATTATGATGCAGGTGAAGCAAAAGTATCAAAAGCACCAGTCAAAACTCAGGACATTATTGAATTTTTTGTGCAACACATGGTGAATGATAAGTTGGGTGTTATCTGTAATGCCCATGTTGTTCATGCAGATTTAAGTGAAATTGGTGCCTTAGATGAAAAATGTCTTGAACTTGCAAAGTTGGCAGCCATGGCTGTTGATTTCCCTAAAACAGGAAAAGTGGCAGTATTGCCTCCCCATCTAAAACCTAAGATATATCCCGATTTCATGGATAAAGATGACTTCGATGGTTACAAATCAGATAAGGTTTTGGGTGTTTTGTATAGGAGAATCAAGGATATGTTTGGGGAAGAGGTAGAAAAATGGAAAATTAATGCCGAATGTGAGAATGTATTTGAAGAACTTCCTTATGATAAAGATTTGGAAACTCGTGGATTTGAGGAATATCTCGAAGAAGCTTGGAACTACAAGTGTTCATATGATCAACAGCTTCGTGCTTTGTTAGGCCAATTCAACGTTAAAAGAGAGGGGGAAGTCGTCACTGGACGCATTTCCACTCTCTCCAAACTTAATAGCAGGAAGCAGGGCGAAATCAAAGAAAGACTGCAGCATGCTTACAGGGCTTTAAGAAATGAGTTTCGGTTCATTTTTCAAGGAAAAACAGATCGTGAAACTCCTGAACCCTGCAAACGGTCTGAATATGAAGCCAAAGCATCTGCGTGGTACCATGTAACGTATCATCCAACATGGGTGCAGAAGGCCAGGGAACTAACAGAACCAGATGGTTATTTCACTTCTCCTCTTCTGAGCTTTCCATGGATTTCTGTTGATTATTTGGCCCAGATAAAGTTGCAAAAGCTCTGCCCAAATGTAGATTATAGTTCGAGAGTCAAAAACTTTACGACTGTTCTGTTTGGTAAAGCATAA___TGGCCGAGTAAGTTTTCTTGCTTTCTTCTGTAGGTAGTAAAA

Fln Alignment:

Contig35656___ILEAVDAPSLHHLVDCLVFPQKGDRPHPNEASGSDLDGDTYFVSWDSSLLPPSGKSFEPMDYDAGEAKVSKAPVKTQDIIEFFVQHMVNDKLGVICNAHVVHADLSEIGALDEKCLELAKLAAMAVDFPKTGKVAVLPPHLKPKIYPDFMDKDDFDGYKSDKVLGVLYRRIKDMFGEEVEKWKINAECENVFEELPYDKDLETRGFEEYLEEAWNYKCSYDQQLRALLGQFNVKREGEVVTGRISTLSKLNSRKQGEIKERLQHAYRALRNEFRFIFQGK-TDRET-PEPCKRSEYEAKASAWYHVTYHPTWVQKARELTEPDGYFTSPLLSFPWISVDYLAQIKLQ
Q9SG02_______________ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE---ASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain