SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35620

Length: 921 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35620

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR	-	-	1.0e-38	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.4013e-45	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; 26.t00057; 27.t00030; ACRE1; Aa1_7580; Aa6_7580; At1g04370; At1g06160; At2g31230; At3g23220; At4g17490; At4g17500; At5g07580; At5g13330; At5g47220; At5g47230; At5g51190; At5g61590; At5g61600; B1234D02.6; B1331F11.13; Bd5g0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17500.1	ATERF-1, ERF-1 ethylene responsive element binding factor 1 chr4:9759405-9760211 FORWARD LENGTH=268	4.06377e-44	51%
RefSeq	Arabidopsis thaliana	NP_567530.4	ethylene-responsive transcription factor 1A [Arabidopsis thaliana]	5.04467e-44	51%
RefSeq	Populus trichocarpa	XP_002332558.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	2.00386e-43	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRQ5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 33 aas, your sequence is shorter than subject: 254 - 350

Fln protein: LDRIRSHLLEDFEGKDEESSFCAMTGNVPSYNRNSSPEVESFIQSALACESVDGNRPEIETETEIPTTAVEPSRPLLSVSVPRLESLGWEKFSVDGGCRNSLGVTSPSVSPCLSAAWAELPLNENVSEDMVLYGILKETANEGWMPVTHKEETAMETEREADVFPVKKEADVRHEMGTQQPVAKKKNVGRHYRGVRQRPWGKFAAEIRDSARQGARVWLGTFNTGEEAALAYDRAAYKIRGSKALLNFPLEVA*

Protein Length: 255

Fln nts: TTGGATCGAATCCGGAGCCATTTACTCGAAGATTTCGAAGGCAAAGATGAAGAATCGTCCTTCTGTGCGATGACAGGAAATGTCCCCTCTTATAACAGAAACTCAAGCCCGGAAGTAGAGAGCTTCATCCAGAGTGCACTGGCATGCGAATCCGTCGACGGCAACAGACCAGAAATCGAAACGGAGACGGAAATACCGACAACGGCCGTTGAGCCCTCCCGTCCCTTGCTCTCCGTTTCCGTTCCCCGACTTGAATCTTTGGGCTGGGAAAAATTCTCAGTCGACGGGGGATGCAGAAATTCCCTCGGCGTTACATCTCCGTCTGTTAGCCCTTGTTTATCCGCCGCCTGGGCAGAGCTGCCGTTAAACGAAAACGTTTCGGAGGACATGGTCTTGTACGGGATTCTCAAAGAGACCGCCAACGAGGGATGGATGCCTGTAACGCACAAGGAGGAGACGGCGATGGAAACGGAAAGGGAAGCCGATGTTTTTCCCGTCAAGAAAGAGGCCGATGTCCGTCATGAAATGGGAACACAGCAGCCGGTGGCCAAGAAGAAGAACGTTGGTAGGCATTACAGGGGCGTGCGGCAGCGGCCGTGGGGGAAGTTCGCAGCGGAGATAAGGGACTCTGCACGGCAGGGGGCTAGAGTTTGGCTGGGCACCTTCAATACAGGGGAGGAGGCGGCTCTCGCTTATGACCGTGCCGCTTACAAGATACGGGGTTCTAAGGCCTTGCTTAATTTCCCGCTCGAAGTTGCTTGACTTCCCGTTATATGTTGGAAGGTTAGAAATTGTAACTACTCTGAGTGCGCTATGTAAAGAGCTTGAGTTAATTTAGTAATTTAGTGTTTGAGTGTTGAGTCAAATATAGAGAGTGAATTAATTTAGTGATTTAGTGTTGAGTCAAGTCTAGTTCAGTGA

Fln Alignment:

Contig35620___LDRIRSHLLEDFEGKDEESSFCAMTGNVPSY-NRNSSPEVESFIQSALACESVDGNRXXXXXXXXXXXXAVEPSRPLLSVSVPRLESLGWEKFSVDGGCRNSLGVTSPSVSPCLSAAWAELPLNENVSEDMVLYGILKETANEGWMPVTHKEETAMETEREADVFPVKKEADVRHEMGTQQPVAK----KKNVGRHYRGVRQRPWGKFAAEIRDSARQGARVWLGTFNTGEEAALAYDRAAYKIRGSKALLNFPLEV
A9NRQ5_______________LDQIRSHLLGDFE-----PSFF-VTGNWGSDPTRNSSPEEENFIQTALTADSVDDSRRETETETLIA--AVKSSRPLLSVSVTRHESFDWEKISVDWALKNSV---TPSVSPCFSAAWTKLPLDENDSEDMVLYGILKEAATKGWLPRTPKEEPVTEIKKEA-ALPVKPDADIRQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFPLEV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
783	25		75		0.996473
798		33		66	0.997452
809			33	66	0.997452
810		33	66		0.997452
849		33		66	0.997452
851		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain