SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35446

Length: 1130 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35446

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome c6 [Arabidopsis thaliana] sp\|Q93VA3.1\|CYC6_ARATH RecName: Full=Cytochrome c6, chloroplastic; AltName: Full=Cytochrome c-552; Short=Atc6; AltName: Full=Cytochrome c-553; AltName: Full=Cytochrome c553; AltName: Full=Soluble cytochrome f; Flags: P	-	-	9.99995e-41	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c, class I	IPR003088	-	0.0	-
Sma3	Cytochrome c domain	IPR009056	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G45040.1	Cytochrome c chr5:18175566-18176851 REVERSE LENGTH=175	61%
RefSeq	Arabidopsis thaliana	NP_568640.1	cytochrome c6 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002333234.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNY8

Fln msg:

Fln protein: MSLCTTVPNLTTSFVLPFKTPTPRISSLASGHLRLRCAQGGAILSRKRVKDDVLSFEQRTQKLGTSLVAGIISISVAVCGTQQVSSAQMLETQQGKAIFQKACIGCHYEGGNVLQPGATLTARDLERNGVATEENIFKITYYGKGRMPGFGEKCTPKGQCTFGPRLSDEDIHLLAEYVKLQADEGWPKLERT*

Protein Length: 194

Fln nts: TTATTATCGACTGTTTCGCGGAATTACAATACGATATGCTGTAAATTCCCATATTTACGGAAAGCATTAATAATATCTCCATAACGAAACAGCCACTGTTCGTCACTACTTGGATAAGATTGTAGTCTTTAAATCTCCCAAGTGTGTAATTGTCAGAGGAACAGAGAAGTCGCTGAA_-_ATGTCCCTTTGCACCACTGTTCCCAATTTAACAACGTCCTTTGTCTTGCCGTTTAAGACTCCAACACCCCGAATCTCTAGCCTTGCTTCTGGACATCTCAGGCTGAGATGTGCACAAGGGGGTGCAATTCTCTCTAGAAAAAGGGTGAAGGATGATGTGTTGTCCTTTGAGCAGAGAACCCAAAAGCTCGGTACTTCGTTGGTGGCTGGCATTATTAGTATATCAGTAGCCGTGTGTGGAACACAGCAAGTATCTTCGGCACAGATGTTAGAGACTCAACAAGGAAAAGCTATATTTCAAAAAGCATGCATTGGATGCCATTATGAAGGTGGAAATGTGTTGCAGCCTGGTGCAACTTTGACTGCAAGAGACCTAGAGAGGAATGGTGTGGCAACAGAAGAAAACATATTCAAAATCACATATTATGGAAAAGGTCGAATGCCAGGATTTGGTGAGAAGTGTACACCAAAGGGGCAATGCACATTTGGTCCACGACTTAGTGATGAAGATATTCACTTGCTGGCTGAGTATGTAAAGTTGCAAGCAGACGAAGGGTGGCCAAAGCTAGAACGTACGTGA___TTATTCAAAATTCGTCGATCACAGATCACAGCAAGAAATAGTTCTGCACTCTCTGGACTTTTTTGTTATCATAAATATGATATATTAAAACTGATTATTTCAGGATTCATCAAGCATAGCAATTTGCAAGAGATAGATCCGCACTATCGGGACTTGCTTGTTATCAGAAATATAATATACTAAAACTGACCTCTTACGGAATTACTATATTTTGCAACTATATGTATTTTATTGGCTAAAAGCAAATGGTAGATACGGGTCTGAGCTTATCATCTTTGCTTGAGTTATGTTTCTTGTATAGAAGCAAGGCTTATTGGTTCCGACTGTTGAAGACGATATAATTGGCTTAACTCACCATCATGGAGTTGATTAAC

Fln Alignment:

Contig35446___MSLCTTVPNLTTSFVLPFKTPTPRISSLASGHLRLRCAQGGAILSRKRVKDDVLSFEQRTQKLGTSLVAGIISISVAVCGTQQVSSAQMLETQQGKAIFQKACIGCHYEGGNVLQPGATLTARDLERNGVATEENIFKITYYGKGRMPGFGEKCTPKGQCTFGPRLSDEDIHLLAEYVKLQADEGWPKLERT
A9NNY8_______________MNLCTTVPNLTASFILPLKTPTLQISRLASGHLSMRCSQGDTILSRKMVKDDVLSFEQRTQKLGASLVAGIISISVAACGTQQVSSAQMLDTQQGKAIFQKACIGCHYEGGNVLQPGATLTARDLERNGVATEENIFKITYYGKGRMPGFGENCTPKGQCTFGPRLSDEDIHLLAEYVKLQADQGWPKLERT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
435	33		66		0.997452
795		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain