SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35395

Length: 884 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene35395 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATPUP11, putative n=1 Tax=Ricinus communis RepID=B9SKH5_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	Gene names
Sma3	At1g44750; At1g47590; At4g08700; At4g18190; At4g18195; At4g18197; At4g18205; At4g18210; At4g18220; At5g41160; F16N3.13; GSVIVT00003405001; GSVIVT00003407001; GSVIVT00018998001; GSVIVT00027937001; MEE6.23; OJ1743_B12.21-1; OJ1743_B12.21-2; OSJNBa0013K16.22

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	purine base transmembrane transporter activity	GO:0005345	Molecular Function	-
Sma3	purine base transport	GO:0006863	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G44750.1	ATPUP11, PUP11 purine permease 11 chr1:16892688-16895168 FORWARD LENGTH=379	56%
RefSeq	Arabidopsis thaliana	NP_001031147.1	purine permease 11 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002326880.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF0

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 285 - 367

Fln protein: MWVAFEILATPLLVPSLITNFQNLNLNLMHTDNSFLMDDIQMCGIPEHHSRVQEGPGLIRDAEPGRGPSRKIFAGKRKTHWAVVIFSVLSLIVGQxxxxxxxxxxxxxxxxxTAKYIVGFICTVAASAIFGLLLPLMQLIFNRVIKKETFAVVLEMQIFTSIVATVVCIVGLFVSGEFRDVKKEAENFTTGKVAYYMTLIWSAIGWQVCSVGGVGLIFLVSSLFSNVISALALPIIPILSVAFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPSKPSTSVLT

Protein Length: 286

Fln nts: ACGCAATAAGACTCTCTGAAACGTGCTGC_-_ATGTGGGTGGCCTTCGAGATTCTCGCAACTCCTCTGCTGGTGCCTTCTTTAATAACCAATTTTCAGAACTTGAATTTGAACTTGATGCACACAGATAATTCATTCCTAATGGATGATATTCAGATGTGTGGTATTCCAGAACACCACAGCAGAGTACAAGAAGGCCCTGGTTTGATTAGGGATGCAGAGCCAGGAAGAGGCCCCAGTAGAAAGATATTTGCAGGAAAAAGGAAGACCCATTGGGCGGTTGTAATATTCAGCGTTTTGTCACTTATTGTGGGTCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGCCAAGTACATAGTAGGCTTCATTTGCACTGTTGCAGCTTCTGCAATCTTTGGGCTGCTTCTTCCATTGATGCAGCTTATATTCAATAGGGTTATAAAGAAGGAGACCTTTGCAGTGGTTCTGGAGATGCAAATTTTCACATCCATTGTTGCTACTGTGGTATGCATAGTTGGATTGTTTGTTAGTGGGGAGTTCAGAGATGTGAAAAAAGAGGCTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGGTCTGCAATAGGTTGGCAGGTTTGTTCGGTTGGTGGAGTGGGTTTGATATTTTTGGTTTCTTCCTTGTTCTCAAATGTGATTAGCGCTCTGGCCCTCCCTATTATACCCATATTATCAGTGGCTTTCTTCCATGACAGAATGGAAGCTCTCAAAATTATTTCGATGTTGTTAAGTATATGGGGATTCGTTTCCTATATATATGGTGGGTACTTGGATTCAAAGCCTTCTAAGCCTTCTACAAGTGTTTTGACCAG

Fln Alignment:

Contig35395___MCGIPEHHSRVQEGPGLIRDAEPGRGPSRKIFAGKRKTHWAVVIFSVLSLIVGQDAATLLNRW*QA*GSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMLLHFLTDGDRPKGVNTAKYIVGFICTVAASAIFGLLLPLMQLIFNRVIKKETFAVVLEMQIFTSIVATVVCIVGLFVSGEFRDVKKEAENFTTGKVAYYMTLIWSAIGWQVCSVGGVGLIFLVSSLFSNXXXXXXXXXXXXXXXAFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPSKPS
B8LLF0_______________MADIQESCSSVQEGPDLITDAEQGGGSNRRILAGKRTTHWVLVIFSILALLVGQAAATLLSRYYFAYGGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILLGVHSDSDRPEGVNTAKHIVGFICTIAASAIYGLLLPLMQLVFDRVIKKETFAVVLEMQIYTSLVATVVCIVGLFVSGEFRDIKEEAHSFTRGKVAYYMTLIWSAIGWQVCSVGVVGLIFLVSSLFSNVISTLALPVVPILSVGFFHDKMDALKIISMLLSIWGFVSYIFGGYVDSKPAMGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain