SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35327

Length: 1700 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene35327 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	H0306B06.7; OSIGBa0092E01.3; OSJNBa0067K08.11; OsJ_15329; POPTRDRAFT_553304;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	1.0e-27	58%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	1.0e-27	58%
RefSeq	Populus trichocarpa	XP_002326532.1	predicted protein [Populus trichocarpa]	7.0e-31	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPS5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MMLRSSSSPILSSIKALKVLEPESSLSRCKSAKLLSSSGAFGSGTSVLEAELHKSFPQSFKPTHKVATVVDRMGSENPSISERKSGVLRPGGGEKEGSGSSPVVRNSQSVSETKDEEAMYIARGYDIGGGHQKVSRADSVSDCTEVYYQKMLEANPGNSLLLRNYAKFLHEVKGNLAKAEEYYERAILASPGDGEVLALYAKLMWEVRRDACHAEAYFDQAVQANPDDW*ASFLPACSLLWQIWILIVLGE*LGLIIWHWMIWLTSWGCLFCSFVLGSYAHFLWDSEEGEEENTDSEMQQGTAGVVMT*

Protein Length: 310

Fln nts: ATGGGGAAACTGTGGCAGGCTAGATACTGTTGCGCAGGCCAAGTTGCATATGGAATCTTCTTTTCTTATCAATCAATTATAAATTGATGACAGACAGAATTTTATGGGGAACTGTGTAGTCATGTGAATTTATAAAGCTTCAAAAGATCCGCTTGAAAGCAATATTCCATATGAGATTGCTATGTTCCTTGATTTTGAGCTGAAAGAAAATGATTTGAACTGAGTTTCATAAGCTTTTAGCATTTTTTCTTCTGGCTTATTGTTTTTATTCTCTGAAAAA_-_ATGATGCTCCGAAGCTCTTCCAGTCCCATTCTGAGCTCCATTAAGGCTCTGAAGGTCCTGGAGCCAGAGTCCAGCCTCAGCCGCTGCAAATCTGCAAAGCTGTTGTCCAGCTCTGGTGCTTTTGGATCAGGGACCTCGGTCTTGGAAGCCGAGCTCCATAAGAGCTTCCCACAGAGTTTCAAACCGACCCATAAGGTTGCAACTGTTGTTGATCGGATGGGAAGTGAAAATCCATCAATCTCGGAAAGAAAAAGTGGTGTTCTCAGGCCTGGAGGAGGAGAAAAAGAGGGCTCTGGTTCGAGTCCCGTGGTGAGAAATTCACAATCTGTGTCTGAGACTAAAGACGAGGAGGCCATGTATATAGCTAGAGGATATGACATTGGTGGTGGGCATCAAAAAGTCTCCAGGGCTGATTCTGTTTCTGATTGTACGGAGGTTTACTATCAGAAAATGCTGGAGGCAAATCCGGGCAACTCACTTCTGCTCAGAAACTATGCAAAGTTCCTGCATGAGGTTAAAGGCAACCTTGCCAAGGCAGAGGAGTACTATGAAAGGGCCATACTTGCAAGCCCTGGCGATGGGGAAGTACTTGCCCTGTATGCGAAGCTGATGTGGGAAGTTCGCAGAGATGCTTGTCATGCCGAGGCTTACTTTGATCAAGCTGTGCAGGCGAACCCTGATGACTGGTGAGCAAGTTTTCTTCCTGCTTGCTCTCTGTTATGGCAAATCTGGATTTTAATTGTATTAGGGGAATGATTAGGCCTGATAATCTGGCATTGGATGATTTGGCTAACCAGTTGGGGTTGCTTGTTTTGCAGCTTTGTTCTGGGCTCCTATGCCCACTTTCTATGGGATTCAGAAGAAGGTGAAGAAGAGAACACAGATTCTGAGATGCAGCAAGGGACAGCTGGCGTGGTGATGACCTAAAACTCTGCAACAGAGGCAGTTTGAAACATAGGTAACCAGCTGCACCTTCTGTAATCAGCTATTTCTGTCAAAAACAGATTTCCACAACCTCCTTCATAGTCATGCAAAGATGAGTGGATTGAGACACCAAGGGAAAGTTTTCAAGGAGGCAAGAGAATGGAGACTGGTTGGAAACATGCTAAGTTGGAAATCTGTTGTTAGAAGCTCTTGTGATTTTTGAAAGAGATGGACATACACTTACCTGCTTGACACCTGAAGTTGAAGATGTAAATGCCTTGTTCCAAAGCTTGTGTGAGTTTCATAGTCTAAACCCTAAGCTTCTATGTATCTAATGAAAATATCTCATGCAGTAAGATCAAAGAGTTTGATGATGTTGAAAAGCATCTGTAAATTCAGTAACAGTTGTTTTGTATTCAATAATCTTTGAAAGTTGTAATAAAATGGCCATGTACTACCTTTTTTACTTCTATATTCATACCTATTTAATGTATTG

Fln Alignment:

Contig35327___KALKVLEPESSLSRCKSAKLLSSSGAFGSGTSVLEAELHKSFPQSFKPTHKVATVVDRMGSENPSISERKSGVLRPXXXXXXXXXXS-PVVRNSQSVSETKDEEAMYIARGYDIGGGHQKVSRADSVSDCTEVYYQKMLEANPGNSLLLRNYAKFLHEVKGNLAKAEEYYERAILASPGDGEVLALYAKLMWEVRRDACHAEAYFDQAVQANPDDW*ASFLPACSLLWQXXXXXXXXXXXXXXXWHWMIWLTSWGCLFCSFVLGSYAHFLWDSXXXXXENTDSEMQQGTAGVVMT*NSATEAV
A9NPS5_______________EALKELEPESSLGRCKSGRLLSSSCAFGSGTWDLEAGLHKSSSKSFKPAHKVAIVVDRMGSEKPSISGRKNDVLRPAGGGGKEGSASSPVVKNSQSVSETEDG-AMHIGRGFGTDGGSQEVSRADSVSDCTEVYFQKMLEANPGNSLLLRNYAKFLHEVQGNLAKAEEYYERAILASPGDGEVLALYAKLMWEVRRDAHHAEAYFDQAVQANPDD--------------------------------------------CFVLGSYAHFLWDSEEGEAGRADSEMQQSSAALVMSYNSATEAV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1098	83		16		0.994512
1156	25		75		0.996473
1490	88	11			0.923564
1590	88	11			0.923564
1592	88	11			0.923564
1593	11		88		0.923564
1604			12	87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain