SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35303

Length: 2610 nt

UniGene Fasta

>sp_v3.0_unigene35303
AAGGCATGGACTTGGAAGATCTCAATTTGAACCTGCTGGTTCAGATTTTTCCTCTGGTGCAACTCTTGCTACAGGTGACCATGCAGTTCGGTCAAGTACACCCATGCAGGATAGCACCAAGATATGGAAGGCTGAAAAGCCTGGAAATCTATTTGGAAATTCAGACGGTATGGGATTCTTGGCTGAAAGCAATTCTGAGAAAGCAGAAGAACATTCAGTGTCTGCTCTTAAGCAACCGGTTTGGAGAAATGGAAGGCGGCCACTGCAGTTGGAAGAGAACCGTCGTGCTACTTACAGGCCATTTAACCAACTAGAGAATGGAAATGACTCAATACTTACTATTCTAGATGGGGAGTCAAAGCAGCTAATCCCTGTTGGAATTCGGTCAGAGCATGCATATGCAAGAAGTCTTGCTCGGTTTGCTGCAAACCTTGGACCAGTTGCCTGGAAGATTGCAGCTCAGAAGATAAGGAGAGCTCTGCCCCCAGGTGTCTCATTTGGCCCTGGATGGGTCGGTGATTATGAGGCTCCTCCTCGTGCTTTATTGTCACATGAAAGAATATCTGTGGCATCAGTGTCCTCTTCCACTACCTCGCCAATTGTTCCAGGTGAAACCAAGATTAAATCAAATAACGCTGAAGATACTCCCAGACTAAGAGATGAAGGGCTTCCAAAGAACTTAATTTCTGAAGGCAGGACTGTTACATCAGCTACAGCAGCTTTGTCAGCAAGACAGTTGGTTTCAAATTCTGCAATTTGTCAAGGGATAGATAATTGTCAACCTATTCGTAATCCTCAATCTGAAGTGATTGGGCATGGCACATTAAATTCTAGTGGTGATGGAAGAGCTAGTTTGCCTTCTCAGGAAGTAAAACAAGGCTCCATAAAGCCAGGTTTAACTGTTACCACATCCAGTGACCTAGCCCTTGCAGGTACAAAATTTGGTTCAGAAGTAACACAGTCCAGATTACTTGAAATGGTCTCAAGAAATAGCACACTCATGCATGGGGCCTCATTAAAGCAGGCTGATGGTTCAAGGTCCATTGCCAGTCTTCAGGTAATGAAATCTGAAAATATGACAAATGACAGTGATGCGCGTGGCGTTGCCAGAAAAGCAAGTGATGCATCAAAACGTGGTTGTAGTTCTCCTGGTACAAATATTGCAGTCACCACAGTAAGCTCTTCTCTATGCAACTATCAAGCTGGATCGAGAGTTTTGCAGGGACATCAAGTCACAAGTAGTCAAGAACATGCTAAGCAGGACTTAAACGGTTTAGCTAATTTACTGCCTGGCAAGATGCTAGCATTACATCAAAGAGGTTCTAATCTGTCTGCAAACACCCCAGTGTTTGTGCATTCATCAGTTTCATCAGCAGGGCCATCTATAAAACGAGATGATGCCACAGTGCAGGCATGGATACAATCACAAAATGCACGGCTGGCAGATGCAGATGCAACTTCTAGAGTCAGGTTACAGGATGCACCGAATCCTCATATGGAGCAGCATGAGTCTCAAGCAAGGGACTTTTCTGCCCTTGCTCGTTTTATGCCACAAGAAATACCCCTGGATACATCCCGTCAGGCTTTGTCACATTTTAGCCGATTCCATCCTCAGAACTCTATGAAGGTGTCTAACAATACAGCAATTTCAGGTCCAGTGACTGAATCCCAGGGTCGAAATACAGTGAGCCCTTCTCATGTACAGAAGCCCATGGGAGTTGAGCTGTCAAAGTCTAATAATCACTTGTGGCGAGGTTTACCTTCACAATTTCTTTCTGAGCAAGATTTGTCACCCTCTGTGCCACCTGATTTGAATGTGAGATTTCAGAAGTCAAACTCTCCAGCTCAGCAGTCCTCTGCAATGTTGGCTGATTCCCAACAACCTGATTTAGCTCTCCAACTTTGATTGATGTAACTGGATTATTGGATTTATACATTGTAAGAATGTGAAATATTAACCCAGACTTCATTCAAATGTTTGTTGAAGTCGGAATTTGTACTGAGGTAAAACTGAATGGCATAGGAAATGGGTTTGCCTTGAAAAGGACCCATTCTGTTGTAAAGGAGTTGTACAAATCTGTACCAATTTTATGGGAACCCGAGGGAGTTCCATGTCCTATTAATATTCTATTGATGAACTAGCATATAACTTCAGGCAAACATTTAGTTCATCATGAAAATATTTCACACCCCTGCTGCATCTCTTACTAATCAGAATAATTTCAAATGTTGTTTTGTATTGAAAGTGGCAGGAGTCGGGAGTTAGCTGAGGGGGGAATTTGGTTACGGATAATGTGGACCAAGACTTGTGGTTCTCTTTTACTAGAAGGAAAAAGAGTATCATTTTTCTAAACACAGCAAAGAGATCAATGATGACAATTCGTGATATTTTGCATGATTTATGCCCTCGAGGAATTCTGCCTTGAAACTCGGCAGGACAGTTCACTTGTTAAACGCATTAGAGCTGGATGTTGTGCAATTTTATCCTGCATGTATTTTATGAGCCAAATATCCTTATTTGTGCAGGATAATACAAGGGATGTGCTCATTTCTGCCGTTGGGCTTGGTACTGTCCACGAGACATTAATTTTGTTAATATGATTGCATTGT

Ace file of the UniGene sp_v3.0_unigene35303

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO	-	-	4.0e-38	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	36%

Source	Gene names
Sma3	GSVIVT00027307001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromodomain	IPR001487	-	0.0	-
Sma3	Bromodomain, conserved site	IPR018359	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6I0R9

Fln msg: your sequence is shorter than subject: 635 - 731

Fln protein: RHGLGRSQFEPAGSDFSSGATLATGDHAVRSSTPMQDSTKIWKAEKPGNLFGNSDGMGFLAESNSEKAEEHSVSALKQPVWRNGRRPLQLEENRRATYRPFNQLENGNDSILTILDGESKQLIPVGIRSEHAYARSLARFAANLGPVAWKIAAQKIRRALPPGVSFGPGWVGDYEAPPRALLSHERISVASVSSSTTSPIVPGETKIKSNNAEDTPRLRDEGLPKNLISEGRTVTSATAALSARQLVSNSAICQGIDNCQPIRNPQSEVIGHGTLNSSGDGRASLPSQEVKQGSIKPGLTVTTSSDLALAGTKFGSEVTQSRLLEMVSRNSTLMHGASLKQADGSRSIASLQVMKSENMTNDSDARGVARKASDASKRGCSSPGTNIAVTTVSSSLCNYQAGSRVLQGHQVTSSQEHAKQDLNGLANLLPGKMLALHQRGSNLSANTPVFVHSSVSSAGPSIKRDDATVQAWIQSQNARLADADATSRVRLQDAPNPHMEQHESQARDFSALARFMPQEIPLDTSRQALSHFSRFHPQNSMKVSNNTAISGPVTESQGRNTVSPSHVQKPMGVELSKSNNHLWRGLPSQFLSEQDLSPSVPPDLNVRFQKSNSPAQQSSAMLADSQQPDLALQL*

Protein Length: 636

Fln nts: AAGGCATGGACTTGGAAGATCTCAATTTGAACCTGCTGGTTCAGATTTTTCCTCTGGTGCAACTCTTGCTACAGGTGACCATGCAGTTCGGTCAAGTACACCCATGCAGGATAGCACCAAGATATGGAAGGCTGAAAAGCCTGGAAATCTATTTGGAAATTCAGACGGTATGGGATTCTTGGCTGAAAGCAATTCTGAGAAAGCAGAAGAACATTCAGTGTCTGCTCTTAAGCAACCGGTTTGGAGAAATGGAAGGCGGCCACTGCAGTTGGAAGAGAACCGTCGTGCTACTTACAGGCCATTTAACCAACTAGAGAATGGAAATGACTCAATACTTACTATTCTAGATGGGGAGTCAAAGCAGCTAATCCCTGTTGGAATTCGGTCAGAGCATGCATATGCAAGAAGTCTTGCTCGGTTTGCTGCAAACCTTGGACCAGTTGCCTGGAAGATTGCAGCTCAGAAGATAAGGAGAGCTCTGCCCCCAGGTGTCTCATTTGGCCCTGGATGGGTCGGTGATTATGAGGCTCCTCCTCGTGCTTTATTGTCACATGAAAGAATATCTGTGGCATCAGTGTCCTCTTCCACTACCTCGCCAATTGTTCCAGGTGAAACCAAGATTAAATCAAATAACGCTGAAGATACTCCCAGACTAAGAGATGAAGGGCTTCCAAAGAACTTAATTTCTGAAGGCAGGACTGTTACATCAGCTACAGCAGCTTTGTCAGCAAGACAGTTGGTTTCAAATTCTGCAATTTGTCAAGGGATAGATAATTGTCAACCTATTCGTAATCCTCAATCTGAAGTGATTGGGCATGGCACATTAAATTCTAGTGGTGATGGAAGAGCTAGTTTGCCTTCTCAGGAAGTAAAACAAGGCTCCATAAAGCCAGGTTTAACTGTTACCACATCCAGTGACCTAGCCCTTGCAGGTACAAAATTTGGTTCAGAAGTAACACAGTCCAGATTACTTGAAATGGTCTCAAGAAATAGCACACTCATGCATGGGGCCTCATTAAAGCAGGCTGATGGTTCAAGGTCCATTGCCAGTCTTCAGGTAATGAAATCTGAAAATATGACAAATGACAGTGATGCGCGTGGCGTTGCCAGAAAAGCAAGTGATGCATCAAAACGTGGTTGTAGTTCTCCTGGTACAAATATTGCAGTCACCACAGTAAGCTCTTCTCTATGCAACTATCAAGCTGGATCGAGAGTTTTGCAGGGACATCAAGTCACAAGTAGTCAAGAACATGCTAAGCAGGACTTAAACGGTTTAGCTAATTTACTGCCTGGCAAGATGCTAGCATTACATCAAAGAGGTTCTAATCTGTCTGCAAACACCCCAGTGTTTGTGCATTCATCAGTTTCATCAGCAGGGCCATCTATAAAACGAGATGATGCCACAGTGCAGGCATGGATACAATCACAAAATGCACGGCTGGCAGATGCAGATGCAACTTCTAGAGTCAGGTTACAGGATGCACCGAATCCTCATATGGAGCAGCATGAGTCTCAAGCAAGGGACTTTTCTGCCCTTGCTCGTTTTATGCCACAAGAAATACCCCTGGATACATCCCGTCAGGCTTTGTCACATTTTAGCCGATTCCATCCTCAGAACTCTATGAAGGTGTCTAACAATACAGCAATTTCAGGTCCAGTGACTGAATCCCAGGGTCGAAATACAGTGAGCCCTTCTCATGTACAGAAGCCCATGGGAGTTGAGCTGTCAAAGTCTAATAATCACTTGTGGCGAGGTTTACCTTCACAATTTCTTTCTGAGCAAGATTTGTCACCCTCTGTGCCACCTGATTTGAATGTGAGATTTCAGAAGTCAAACTCTCCAGCTCAGCAGTCCTCTGCAATGTTGGCTGATTCCCAACAACCTGATTTAGCTCTCCAACTTTGA___TTGATGTAACTGGATTATTGGATTTATACATTGTAAGAATGTGAAATATTAACCCAGACTTCATTCAAATGTTTGTTGAAGTCGGAATTTGTACTGAGGTAAAACTGAATGGCATAGGAAATGGGTTTGCCTTGAAAAGGACCCATTCTGTTGTAAAGGAGTTGTACAAATCTGTACCAATTTTATGGGAACCCGAGGGAGTTCCATGTCCTATTAATATTCTATTGATGAACTAGCATATAACTTCAGGCAAACATTTAGTTCATCATGAAAATATTTCACACCCCTGCTGCATCTCTTACTAATCAGAATAATTTCAAATGTTGTTTTGTATTGAAAGTGGCAGGAGTCGGGAGTTAGCTGAGGGGGGAATTTGGTTACGGATAATGTGGACCAAGACTTGTGGTTCTCTTTTACTAGAAGGAAAAAGAGTATCATTTTTCTAAACACAGCAAAGAGATCAATGATGACAATTCGTGATATTTTGCATGATTTATGCCCTCGAGGAATTCTGCCTTGAAACTCGGCAGGACAGTTCACTTGTTAAACGCATTAGAGCTGGATGTTGTGCAATTTTATCCTGCATGTATTTTATGAGCCAAATATCCTTATTTGTGCAGGATAATACAAGGGATGTGCTCATTTCTGCCGTTGGGCTTGGTACTGTCCACGAGACATTAATTTTGTTAATATGATTGCATTGT

Fln Alignment:

Contig35303___LGRSQFEPAGSDFSSGATLATG-DHAVRSSTPMQDSTKIWKAEKPGNLFGNS-------DG-MGFLAESNSEKAEEHSVSALKQPVWRNGRRPLQLEENRRATYRPFNQLENGND-SILTILDGESKQLIPVGIRSEHAYARSLARFAANLGPVAWKIAAQKIRRALPPGVSFGPGWVGDYEA-PPRALLSHERIXXXXXXXXXXXPIVPGETKIKSNNAEDTPRLRDEGLPKNLISEG------RTVTSATAALS---ARQLVSNSAICQGIDNCQPIRNPQS----------EVIGHGTLNSSGDGRASLPSQEVKQG--SIKPGL
F6I0R9_______________LGRPSLERPGSEFSSDATLATGGENTMWSNHDLRKGALISDKSGPADSFGRSLHGTRYSDGNTGWSADQKLERHDEFTGSILKGISLKHAKKPFVLDENRRNTYKQSSSIAVGREPSVLTTFDGEKKQLMPVGLNAEYGYARSLARFASNLGPVAWKIAAKKIEKSLPPGVKFGPGWVGENDVIPPKPL------------------FVPSSTPLSSLPGDSIPCSMDSQEDKPSQKTGGIGLPERNVLSARAALANHPGKSLLTSAAASPLINTANKASGPSSGSTEASIGLNAQSGFSILNSSAGAVRPRPPFQIHQGPTALHPGM

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
717			75	25	0.996473
718		75		25	0.996473
1926	12			87	0.999964
1927		12	87		0.999964
2157	14	14	71		0.984337
2185	20			80	0.995493
2186	20			80	0.995493
2189		80		20	0.995493
2190	80			20	0.995493
2194		80	20		0.995493
2216			80	20	0.995493
2217	83			16	0.994512
2258			33	66	0.997452
2314			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain