SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35286

Length: 1439 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35286

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylcoumaran benzylic ether reductase n=6 Tax=Pinaceae RepID=O81651_PINTA	-	-	94%
FL-Next	tr=Phenylcoumaran benzylic ether reductase PT1; Pinus taeda (Loblolly pine).	-	-	94%
Sma3	Phenylcoumaran benzylic ether reductase PT1	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	NmrA-like	IPR008030	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39230.1	NmrA-like negative transcriptional regulator family protein chr4:18266024-18267604 REVERSE LENGTH=308	62%
RefSeq	Arabidopsis thaliana	NP_195634.1	NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002302025.1	phenylcoumaran benzylic ether reductase 1 [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9LL41

Fln msg:

Fln protein: MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLARESTASSNSEKAQLLESFKASGANIVHGSLEDHASLVEAVKKVDVVISTVGSLQIETQVNIIKAIKEVGTVKRFFPSEFGNDVDNVNAVEPAKSVFQVKAKIRREIEAAGIPYTYVSSNCFAGYFLPSLAQAGLTAPPRDKVIILGDGNAKVVYVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSFNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGAEASQLYPDVKYTTVDEYLSNFV*

Protein Length: 310

Fln nts: GATCGTACAAACTTCTGTGAACATCGTTGTAATTTATCTTCACTGGATTAGCGTTATTCAGCTGAGTACAGACAATTCGATTAAGTTTCAGGGCCCAG_-_ATGGGAAGCAGGAGCAGGATACTCCTAATTGGCGCAACAGGCTACATTGGTCGCCATGTTGCCAAGGCTAGCCTTGATCTCGGCCATCCCACCTTCCTTCTCGCTAGAGAGTCCACGGCTTCTTCTAATTCTGAGAAAGCCCAGCTTCTAGAATCCTTCAAGGCCTCAGGTGCAAATATAGTCCATGGATCATTAGAGGATCATGCAAGCCTTGTGGAGGCAGTGAAGAAGGTAGACGTCGTGATCTCCACAGTTGGATCACTACAGATAGAGACGCAGGTCAATATTATCAAGGCTATTAAAGAAGTCGGAACGGTCAAGAGGTTTTTCCCATCTGAGTTCGGGAATGATGTTGATAACGTCAATGCAGTGGAGCCTGCAAAGAGTGTGTTTCAGGTGAAAGCCAAAATCCGTAGGGAAATCGAGGCAGCGGGCATTCCTTATACATACGTCTCTAGCAATTGTTTTGCAGGGTATTTCCTTCCAAGCCTCGCACAGGCTGGCCTTACAGCTCCTCCAAGGGATAAAGTTATCATTCTTGGAGATGGAAATGCCAAAGTCGTGTATGTGAAGGAGGAAGACATTGGAACTTTTACAATCAAGGCAGTGGACGATCCCAGAACTTTGAACAAGACCTTATACTTGAGGCTTCCTGCCAACACTCTGTCTTTCAATGAGCTTGTGGCTCTCTGGGAGAAGAAGATTGATAAGACTCTGGAGAAGGCCTACGTCCCCGAGGAGGAGGTTCTTAAATTAATCGCAGATACACCATTCCCAGCTAATATTAGCATAGCAATTAGTCATTCTATCTTCGTGAAAGGAGATCAAACAAATTTTGAAATTGGACCTGCTGGTGCAGAGGCTAGTCAGCTGTACCCTGATGTGAAATACACCACCGTCGATGAGTACCTGAGCAATTTTGTGTGA___ACTATGCGACATTCTTCAACAGACCTAAGAGATTAAATAGTGGTTTCTATGAAAGTTTATATAAGGCATTTTGCCAAATTGTAGGTTATCGCCTTTCATAGATATTTGACAAAACAGAACCTCCTGTTTAGTATATTATGATAAGCCAGGCTAGGTAGATCCTTCACACATTTCTGTTCTATAAGAAGTAAATATAGAAAATATCCGTTTTTTGTTTTTTGATTAGATAACTGTGCCTGATAACTTGTTGTAAACCCTAATTCCATACTCTTTGTTTGAACACATTTCTGTTCTCTAAGATGCAAATATCCGTTGTTTGTTTTCTTTCAGCGGGGTGTGACACCAATAATGCCTTTGAAAACTGTATATTTGGGTAAGTGTATTGTCTTGGGTCTATTTGCTAAATGTTATGTT

Fln Alignment:

Contig35286___MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLARESTASSNSEKAQLLESFKASGANIVHGSLEDHASLVEAVKKVDVVISTVGSLQIETQVNIIKAIKEVGTVKRFFPSEFGNDVDNVNAVEPAKSVFQVKAKIRREIEAAGIPYTYVSSNCFAGYFLPSLAQAGLTAPPRDKVIILGDGNAKVVYVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSFNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGAEASQLYPDVKYTTVDEYLSNFV
Q9LL41_______________MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain