SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35281

Length: 495 nt

UniGene Fasta

>sp_v3.0_unigene35281
CTGAGGACCGGCCGGGATACAGAAGGAGCACGACCTGAGAGAGGGCGATTCTGACTCTTTGTGGCGCCTCAGAGGAAATGGCCGGGATGAATAATATTGTTTTTGGGTCTCGATGTAAGGAGGCCCAACTGAACATTGATTTTGGAAGCTGCATTATCTGAGTAATTGGGCTGAATTAAGTGGCCGAATAAGAGTTGAGCAGGTTGAATTTTCCTGGCTGCACCAAATTTTCAGGATAAGGCCGTACTGGGTCAACATAATTTGGCAGGCTACATTCTGAAGCATATTATCAGTGAACTAGAGTGAGTATGGATAAAGATGGAGCTTACAAAGGAGACAAACTCATATTGCAAGGTCTGTTGTTTCACGGTTTCCATGGAGTACTTGAGGAGGAGAGAAAGCTTGGCCAAAAGTTCTGGTGGATTTGGATGCTTGGATAGATCTTAAAAAGGCTGGAAAATCGGACAACCTAGAAGATACTGTCAGCTATGCTGA

Ace file of the UniGene sp_v3.0_unigene35281

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dihydroneopterin aldolase [Solanum lycopersicum]	-	-	4.0e-13	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Dihydroneopterin aldolase	-	-	1.898e-09	-

Source	Gene names
Sma3	OJ1150_A11.9; Os08g0556200; OsI_30221; OsJ_28246; P0439B07.24; POPTRDRAFT_825166; VITISV_023634;

Source	GOs	Term	Type	e value	Identity
Sma3	dihydroneopterin aldolase activity	GO:0004150	Molecular Function	0.0	-
Sma3	folic acid-containing compound metabolic process	GO:0006760	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dihydroneopterin aldolase	IPR006156	-	0.0	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11750.1	FOLB1 Dihydroneopterin aldolase chr3:3715071-3715904 REVERSE LENGTH=146	3.0e-14	80%
RefSeq	Arabidopsis thaliana	NP_187781.1	Dihydroneopterin aldolase [Arabidopsis thaliana]	3.0e-14	80%
RefSeq	Populus trichocarpa	XP_002323367.1	predicted protein [Populus trichocarpa]	5.0e-14	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSQ3

Fln msg: Overlapping hits, possible frame ERROR between 416 and 398, Distance to subject end: 68 aas, your sequence is shorter than subject: 62 - 131

Fln protein: MDKDGAYKGDKLILQGLLFHGFHGVLEEExxxxxxxxVDLDAWIDLKKAGKSDNLEDTVSYA

Protein Length: 63

Fln nts: CTGAGGACCGGCCGGGATACAGAAGGAGCACGACCTGAGAGAGGGCGATTCTGACTCTTTGTGGCGCCTCAGAGGAAATGGCCGGGATGAATAATATTGTTTTTGGGTCTCGATGTAAGGAGGCCCAACTGAACATTGATTTTGGAAGCTGCATTATCTGAGTAATTGGGCTGAATTAAGTGGCCGAATAAGAGTTGAGCAGGTTGAATTTTCCTGGCTGCACCAAATTTTCAGGATAAGGCCGTACTGGGTCAACATAATTTGGCAGGCTACATTCTGAAGCATATTATCAGTGAACTAGAGTGAGT_-_ATGGATAAAGATGGAGCTTACAAAGGAGACAAACTCATATTGCAAGGTCTGTTGTTTCACGGTTTCCATGGAGTACTTGAGGAGGAGxxxxxxxxxxxxxxxxxxxxxxxxGTGGATTTGGATGCTTGGATAGATCTTAAAAAGGCTGGAAAATCGGACAACCTAGAAGATACTGTCAGCTATGCTGA

Fln Alignment:

Contig35281___MDKDGAYKGDKLILQGLLFHGFHGVLEEERxxxxxxLVDLDAWIDLKKAGKSDNLEDTVSYA
A9NSQ3_______________MDKDGAYKGDKLILQGLLFHGFHGVFEEERxxxxxxLVDLDAWLDLKRAGKSDNLEDTVSYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain