SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35250

Length: 598 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35250

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0528100 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0D5X2_ORYSJ	-	-	6.0e-31	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	0.0	-

Source	Gene names
Sma3	AT4g16870; At2g05390; At2g15650; At2g17490; B1110B01.13; B1110B01.4; F11I4_21; H0211A12.10; H0716A07.9; LOC_Os03g11850; LOC_Os03g13700; LOC_Os03g14060; LOC_Os03g20080; LOC_Os03g21050; LOC_Os03g21419; LOC_Os03g24260; LOC_Os03g29130; LOC_Os03g30450; LOC_Os0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3	Copine	IPR010734	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
301			33	66	0.997452
308	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain