SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35245

Length: 190 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene35245
GTGTCTTGTGCAGCTGGCAATGCAGGCCCAATTGCTTCTATGATTTCCAACACGGCGCCATGGATAACCACCGTAGGCGCCAGCACCATCGACCGAGAGTTCCCGGCTCCGGTGGTGCTTGGGAACGGAAAAAACTACAGAGGCTCGTCGCTTTACAAAGGCAAGACGCTGGGCAACAAGCAATTACATT

Ace file of the UniGene sp_v3.0_unigene35245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like serine proteinase, putative n=1 Tax=Musa acuminata RepID=Q1EPF3_MUSAC	-	-	4.0e-17	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Subtilisin-like protease	-	-	4.253e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	1.86e-12	-

Source	Gene names
Sma3	AIR3; ARA12; ASP48; At1g01900; At1g04110; At2g04160; At3g14240; At5g51750; At5g67360; F20D22.12; F22M8.3; GSVIVT00004225001; GSVIVT00013662001; GSVIVT00014936001; GSVIVT00016430001; GSVIVT00019628001; GSVIVT00026328001; GSVIVT00026329001; GSVIVT0002804200

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	external side of plasma membrane	GO:0009897	Cellular Component	-
Sma3	extracellular matrix	GO:0031012	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G67360.1	ARA12 Subtilase family protein chr5:26872192-26874465 REVERSE LENGTH=757	1.0e-22	66%
RefSeq	Arabidopsis thaliana	NP_569048.1	subtilisin-like protease [Arabidopsis thaliana]	2.0e-22	66%
RefSeq	Populus trichocarpa	XP_002301156.1	predicted protein [Populus trichocarpa]	2.0e-19	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV9

Fln msg: Distance to subject end: 379 aas, your sequence is shorter than subject: 63 - 766

Fln protein: VSCAAGNAGPIASMISNTAPWITTVGASTIDREFPAPVVLGNGKNYRGSSLYKGKTLGNKQLH

Protein Length: 64

Fln nts: GTGTCTTGTGCAGCTGGCAATGCAGGCCCAATTGCTTCTATGATTTCCAACACGGCGCCATGGATAACCACCGTAGGCGCCAGCACCATCGACCGAGAGTTCCCGGCTCCGGTGGTGCTTGGGAACGGAAAAAACTACAGAGGCTCGTCGCTTTACAAAGGCAAGACGCTGGGCAACAAGCAATTACATT

Fln Alignment:

Contig35245___VSCAAGNAGPIASMISNTAPWITTVGASTIDREFPAPVVLGNGKNYRGSSLYKGKTLGNKQL
C0PQV9_______________VSCAAGNAGPIPSKIFNTAPWITTVGASTIDREFPAPVVLGNGKNYRGSSLYKGKTLGNGQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain