SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35101

Length: 1465 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35101

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=1 Tax=Pinus banksiana RepID=Q43020_PINBN	-	-	0.0	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	ECs	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Fatty acid metabolism	00071	%
Sma3	Glycine, serine and threonine metabolism	00260	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Chloroalkane and chloroalkene degradation	00625	%
Sma3	Naphthalene degradation	00626	%
Sma3	Retinol metabolism	00830	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	%
Sma3	Drug metabolism - cytochrome P450	00982	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AdhC1;

Source	GOs	Term	Type	Identity
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77120.1	ADH1, ADH, ATADH, ATADH1 alcohol dehydrogenase 1 chr1:28975509-28977216 FORWARD LENGTH=379	73%
RefSeq	Arabidopsis thaliana	NP_177837.1	alcohol dehydrogenase class-P [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002328464.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0H5

Fln msg:

Fln protein: MASSTAGQVIKCKAAVAWGAGEPLKIEEVEVDPPQSMEVRIKVHYTALCHSDLIFWEAKGQTPLFPCIFGHEAAGIIESVGEGVTDLKEGDTVLPVFTGECKECRHCKSEDSNMCDLLRVSIETGVMKSDGKSRFSIHGKPIYHFAGTSTFSEYTVVHSGCVAKINPKAPLNKVCILSCGVSTGMGAALNVAKPKQGSTVAIFGLGTVGLAAAEGSRMAGASRIIGIDLNSGKFERAKLFGVTESLNPLDYEKSIQQVIAEKTDGGVDYSIECTGNVKAMIQAFESCHIGGGVTVLVGFPPSDAVFATDPLNFLSERTLKGTFFGNYKPLSHLPGLVEMYLNKKLELEKFITHEVSFVDINKAFDYMIKGESLRCVINVIGN*

Protein Length: 384

Fln nts: GGGAAAAGTAAGTTTGTTTGTTTCTTCGGCATAATATAATATATTACATAAGCTAGCAAGAAAATACCGTTTGGGCAGAAAGGAAA_-_ATGGCGAGCTCTACTGCAGGCCAGGTTATCAAATGCAAAGCTGCTGTTGCGTGGGGTGCAGGGGAGCCTCTGAAGATTGAAGAAGTGGAGGTAGATCCGCCACAGTCAATGGAAGTGAGAATCAAAGTGCATTATACCGCCTTGTGCCACTCAGACCTTATTTTCTGGGAAGCAAAGGGCCAGACTCCTCTCTTTCCCTGCATCTTTGGACATGAAGCAGCTGGAATTATAGAGAGTGTTGGAGAAGGGGTGACTGACCTCAAGGAGGGTGACACTGTGCTTCCTGTATTTACTGGAGAATGCAAAGAATGCAGACATTGCAAGTCAGAGGACAGCAACATGTGTGATCTGCTGAGGGTCAGTATAGAGACAGGGGTTATGAAAAGTGATGGAAAGTCAAGGTTTTCCATCCATGGGAAACCGATTTACCACTTCGCTGGTACATCAACTTTCAGTGAGTACACGGTTGTGCACAGTGGTTGTGTTGCCAAAATTAATCCAAAGGCTCCTCTTAACAAAGTTTGCATTCTCAGTTGTGGGGTCTCAACAGGGATGGGTGCAGCTTTGAATGTAGCCAAACCCAAGCAGGGTTCAACAGTAGCAATATTTGGCCTGGGGACTGTTGGGCTTGCAGCTGCTGAAGGGTCAAGAATGGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGGCAAATTTGAAAGAGCAAAACTCTTCGGCGTAACAGAATCTCTAAACCCCCTGGACTACGAGAAATCAATTCAACAGGTTATCGCTGAGAAAACTGATGGAGGGGTGGACTACAGCATCGAATGCACAGGGAATGTTAAGGCCATGATTCAAGCCTTCGAATCCTGTCATATCGGTGGGGGTGTTACGGTATTGGTGGGGTTCCCTCCTTCAGACGCAGTCTTTGCAACGGATCCTTTGAATTTTCTCTCTGAGAGGACATTGAAAGGAACATTCTTTGGAAACTATAAACCCCTTTCTCATTTACCAGGGCTTGTAGAAATGTATTTGAATAAGAAGCTTGAACTGGAGAAATTTATCACACATGAGGTTTCATTTGTCGATATCAATAAGGCATTTGATTACATGATTAAAGGAGAGAGTCTGAGATGTGTGATTAACGTGATTGGTAATTAA___ATGGGATAGAGGAAGTCGTAAGTTTAATATAAGTGTAACGTACATACAGTTACTGTAATATTTGAATTTTTCTGAAGTTTATTACAGCTTGTGTGGTGGATAGTTATGATGGCATCTGCTTATTAGATTGATTTCCGTGCACTCGATACATTGCAGAAAGAACAGTGAAAGAACTTATAGTTTTGAAAAATAAATTAAAATGTCATAAATTTGAAGCATTGTTATTGCTA

Fln Alignment:

Contig35101___MASSTAGQVIKCKAAVAWGAGEPLKIEEVEVDPPQSMEVRIKVHYTALCHSDLIFWEAKGQTPLFPCIFGHEAAGIIESVGEGVTDLKEGDTVLPVFTGECKECRHCKSEDSNMCDLLRVSIETGVMKSDGKSRFSIHGKPIYHFAGTSTFSEYTVVHSGCVAKINPKAPLNKVCILSCGVSTGMGAALNVAKPKQGSTVAIFGLGTVGLAAAEGSRMAGASRIIGIDLNSGKFERAKLFGVTESLNPLDYEKSIQQVIAEKTDGGVDYSIECTGNVKAMIQAFESCHIGGGVTVLVGFPPSDAVFATDPLNFLSERTLKGTFFGNYKPLSHLPGLVEMYLNKKLELEKFITHEVSFVDINKAFDYMIKGESLRCVINVIGN
A9P0H5_______________MPSSTAGQVIKCKAAVAWGAGEPLKIEEVEVAPPQASEVRIKVHYTALCHTDLYFWEAKGQTPLFPRILGHEAAGIIESVGEGVTDLKVGDTVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFLGTSTFSEYTVAHVGCVAKINPEAPLDKVCILSCGVSTGMGATLNVAKPKKGSTVAIFGLGGVGLAAAEGARIAGASRIIGIDLNSDRFEKAKLFGVTEFINPKDHEKPIQEVIAERTDGGVDSSIECTGNVKAMIQAFESCHDGWGVAVLVGVPHSDAVFATSPTHFLSERTLKGTFFGNYKPRSDLPGLVELYLDKKLELEKFITHEVSFANINKAFDYMIKGESLRCVINVIGD

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
343	66		33		0.997452
408	75		25		0.996473
409	75			25	0.996473
415	75			25	0.996473
650		25		75	0.996473
674		25	75		0.996473
675	25		75		0.996473
676			75	25	0.996473
731	33		66		0.997452
735	66			33	0.997452
736			66	33	0.997452
761			33	66	0.997452
762			66	33	0.997452
832		25		75	0.996473
833			25	75	0.996473
869		75	25		0.996473
891		25		75	0.996473
916			16	83	0.994512
935	16	83			0.994512
936	16			83	0.994512
940	83			16	0.994512
959			16	83	0.994512
999			83	16	0.994512
1000			16	83	0.994512
1001		83	16		0.994512
1002			16	83	0.994512
1011	83		16		0.994512
1111	83		16		0.994512
1288		83		16	0.994512
1309	20			20	0.99255
1422	33		66		0.997452
1447	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain