SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35093

Length: 546 nt

UniGene Fasta

>sp_v3.0_unigene35093
AATGTAGAGATAATGTATTTCGTGTGGTTTATGAACACATATATGCTTCTGCTAGACGGGGAGGAGCAGGGGGAGGAGCCCTGTTTTGGCAGCTGATGACAGAAGGAATGAGCTCAGATGGAGATGGGTATGAGGTTGTCTTGTCCCAGAATCCTTCCACAGCATCTCTCATTTCTAGTCAGTCTCATAAATTGGCTGAGCTTACTCATTTGTTAACAAAGTTGTATGAGACTGGAGGCCGAGATTGATTGTCTAATTTGTGTACATATTTGGTGAGAGTATTTCTGCACTAAGTATTAGTTAGTATTGAAATCTATATTGATCAGGTATTAGTGAAATCTCGATTGAGCAGCTTGATGTTGATGATAGTCAAAAGCCTCTGAACCAGAGCGAGAAGATGGGGAGCTGCGTAAACATCGAGTTCCAGTTCCATAGGTGCCCTTGGGTAAAAGTGAAGCAAACAAGCAGGGGCAAATTGGTATATACATGAATTTTACTATGAGGAGATGCAAGAGTATATGCTTGTTACTCTATAAACCAATGTTG

Ace file of the UniGene sp_v3.0_unigene35093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydrolase, hydrolyzing O-glycosyl compounds, putative	-	-	4.0e-10	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Chromosome chr18 scaffold_61, whole genome shotgun sequence	-	-	1.423e-11	-

Source	Gene names
Sma3	GSVIVT00014580001; GSVIVT00032045001; GSVIVT00032047001; GSVIVT00032048001; GSVIVT00032050001; MA4_25J11.12; Man1; POPTRDRAFT_1072489; POPTRDRAFT_559750; VITISV_023482;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	mannan endo-1,4-beta-mannosidase activity	GO:0016985	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	0.0	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66460.1	MAN7, AtMAN7 Glycosyl hydrolase superfamily protein chr5:26538911-26540837 REVERSE LENGTH=431	7.0e-11	47%
RefSeq	Arabidopsis thaliana	NP_201447.1	mannan endo-1,4-beta-mannosidase 7 [Arabidopsis thaliana]	9.0e-11	47%
RefSeq	Populus trichocarpa	XP_002306881.1	predicted protein [Populus trichocarpa]	6.0e-15	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8H8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 51 - 74

Fln protein: MTEGMSSDGDGYEVVLSQNPSTASLISSQSHKLAELTHLLTKLYETGGRD*

Protein Length: 52

Fln nts: AATGTAGAGATAATGTATTTCGTGTGGTTTATGAACACATATATGCTTCTGCTAGACGGGGAGGAGCAGGGGGAGGAGCCCTGTTTTGGCAGCTG_-_ATGACAGAAGGAATGAGCTCAGATGGAGATGGGTATGAGGTTGTCTTGTCCCAGAATCCTTCCACAGCATCTCTCATTTCTAGTCAGTCTCATAAATTGGCTGAGCTTACTCATTTGTTAACAAAGTTGTATGAGACTGGAGGCCGAGATTGA___TTGTCTAATTTGTGTACATATTTGGTGAGAGTATTTCTGCACTAAGTATTAGTTAGTATTGAAATCTATATTGATCAGGTATTAGTGAAATCTCGATTGAGCAGCTTGATGTTGATGATAGTCAAAAGCCTCTGAACCAGAGCGAGAAGATGGGGAGCTGCGTAAACATCGAGTTCCAGTTCCATAGGTGCCCTTGGGTAAAAGTGAAGCAAACAAGCAGGGGCAAATTGGTATATACATGAATTTTACTATGAGGAGATGCAAGAGTATATGCTTGTTACTCTATAAACCAATGTTG

Fln Alignment:

Contig35093___LFWQLMTEGMSSDGDGYEVVLSQNPSTASLISSQSHKLAELTHLLTKLYE
D5A8H8_______________MFWQLMVEGMSSYGDGYEIVLSQNPSTASIISAQSHKLAELTHMFTRMYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain