SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35083

Length: 1240 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35083

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein xyloglucan endotransglucosylase; Pinus pinaster (Maritime pine).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03210.1	XTH9 xyloglucan endotransglucosylase/hydrolase 9 chr4:1416019-1417197 FORWARD LENGTH=290	58%
RefSeq	Arabidopsis thaliana	NP_192230.1	xyloglucan endotransglucosylase/hydrolase protein 9 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002326087.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKM0

Fln msg:

Fln protein: MYHCSADKLLLTMACLRMQSCCFFILVFCFWVSNCAEFNDIFEPSWAIDHVINEGELLKLKLDNFSGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGNREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERLGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKRFDIDANEYGLNGESRGVIENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF*

Protein Length: 300

Fln nts: GCC_-_ATGTACCATTGTAGTGCAGATAAGCTGTTGTTGACAATGGCTTGTTTAAGAATGCAGAGTTGCTGCTTCTTCATTCTGGTTTTTTGCTTCTGGGTATCTAATTGTGCAGAGTTCAATGATATCTTCGAGCCCAGCTGGGCGATTGATCATGTTATAAACGAGGGAGAGCTGTTGAAGCTGAAGCTCGATAACTTTTCTGGCGCTGGCTTTGCTTCCAAGGCAACATATTTGTTTGGAAAAGCAGGGGCGCAGATTAAACTCGTTCCCGGCGACTCTGCGGGCACAGTGACTGCCTTTTATATGTCTTCCGAGGGGACTTTGCACGATGAATTCGATTTCGAATTCTTGGGAAATGCTTCGGGTGAGCCTTACATTGTGCAGACTAATATCTACTCCAACGGCACTGGCAACAGGGAACAACGCATTTACCTCTGGTTCGACCCCACGGCAGATTTCCATTCCTATTCTTTTTTGTGGAACCACAAGCAAGTTGTATTCTTTGTAGACAGTGTTCCGATTAGGGTATTCCCCAACAACGAGAGGCTGGGAGTCCCATATCCTAAGAAACAGCCCATGAGGGTATCCTCTTCAATCTGGAATGCAGATAACTGGGCTACTCAAGGTGGGCGGCTGAAGATAAACTGGAGCCATTCTCCTTTTATCTCCACTTACAAAAGGTTCGACATCGATGCAAACGAATACGGATTAAATGGAGAATCAAGAGGGGTTATTGAGAATGGAAGTAAGTGGTGGGACAGGCCCTCTCATTCTTCCCTTACTCCATTGCAAAGGCGAATGCTCCGATGGGTGCATCGGAACTATATCATCTATGACTACTGCAAGGATTCGACCAGGTTTTCCACTTCACCACCTGAGTGTGCAGGCCTCCGCTTCTAG___TTGTTCTCTATATTTTCAAATGGCTGTTTAGGGTATAGCTGTGCTTCCTCAATTTTACTATGATAGCAATGAAACAGATGAATCTGGATAATGTTTCTGCAAAAATGCAATCACAGTACTATCTCAATGCTGCCTCTGTATAGCTCCTGCTATCCATTCTCGTTATGTATAATATGATGCCTATAATACCTATGTATAACAGGAAGTATAACTCCTGTTGGCCATTCTAGTTGGAATGTTGCATACATTCTGGCATAACCAGTAATAAAATACAACCTTTGGTTATGGTTAGCCCTGTAAGTGTTTTTTTGCATTATTTAACGAGGATTTGCACTAAAAG

Fln Alignment:

Contig35083___MACLRMQSCCFFILVFCFWVSNCAEFNDIFEPSWAIDHVINEGELLKLKLDNFSGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGNREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERLGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKRFDIDANEYGLNGESRGVIENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF
F4MKM0_______________MACLRLQSCCFFVLVFCFWVSNCAEFNDIFEPSWAIDHVMNEGELLKLKLDNFSGAGFASKATYLFGKVGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGDREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERVGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKGFDIDANEYGLNGESRGVIENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
609	80		20		0.995493
1128		12		87	0.992554
1184		38	61		1.0
1192		17		82	1.0
1205		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain