SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35073

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene35073
ACGGAGACAGTGGTCCGCCTCGATTTGTCAGTAAGACCATTCAGGGTTTACACGGATGCGAAGCAGGTGGACGCTGATACCGTCATCATTGCCACGGGGCGGTGGCCAAGCGCCTGGATTTTCCGGGGGCTGGCGAGGGAGATGACGGGTTCTGGAACAGGGGTATCTCTGCCTGCGCCGTCTGTGATGGTGCCGCTCCCATTTTCCGCAACCGGCCTCTGGCTGTGATTGGGGGCGGAGACTCGGCAATGGAGGAGGCCAACTTCTTGACCAAATACGGTAGCAAAGTTTATATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGCCACAAA

Ace file of the UniGene sp_v3.0_unigene35073

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	92%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Thioredoxin reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		0.0	%
Sma3	Selenocompound metabolism	00450		0.0	%

Source	Gene names
Sma3	At2g17420; At2g41680; At4g35460; CHLREDRAFT_132865; CHLREDRAFT_196120; CHLREDRAFT_78928; CvNTR-C; F5J6.18; GSVIVT00006001001; GSVIVT00025615001; MICPUCDRAFT_23559; NTR1; NTR2; NTR3; NTRC; NTRC1; OJ1479_B12.9; OSJNBb0039F24.13; OSTLU_28227; Os02g0713400; O

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	removal of superoxide radicals	GO:0019430	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	thioredoxin biosynthetic process	GO:0042964	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3		IPR012335	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17420.1	NTRA, ATNTRA, NTR2 NADPH-dependent thioredoxin reductase A chr2:7564357-7566219 FORWARD LENGTH=378	78%
RefSeq	Arabidopsis thaliana	NP_179334.4	NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002317631.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXV4

Fln msg: Overlapping hits, possible frame ERROR between 99 and 96, Distance to subject end: 71 aas, your sequence is shorter than subject: 172 - 376

Fln protein: TETVVRLDLSVRPFRVYTDAKQVDADTVIIAxxxVAKRLDFPGAGEGDDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPAT

Protein Length: 173

Fln nts: ACGGAGACAGTGGTCCGCCTCGATTTGTCAGTAAGACCATTCAGGGTTTACACGGATGCGAAGCAGGTGGACGCTGATACCGTCATCATTGCCxxxxxxxxxGTGGCCAAGCGCCTGGATTTTCCGGGGGCTGGCGAGGGAGATGACGGGTTCTGGAACAGGGGTATCTCTGCCTGCGCCGTCTGTGATGGTGCCGCTCCCATTTTCCGCAACCGGCCTCTGGCTGTGATTGGGGGCGGAGACTCGGCAATGGAGGAGGCCAACTTCTTGACCAAATACGGTAGCAAAGTTTATATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGCCACAAA

Fln Alignment:

Contig35073___TETVVRLDLSVRPFRVYTDAKQVDADTVIIATxAVAKRLDFPGAGEGDDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPAT
A9NXV4_______________TETVVRLDLSVRPFRVYTDTKQVDADTVIIATxAVAKRLDFPGAGEGEDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRTLDNPKIEVIWNTEVLKASGNESGSLSGLNLRNTVTDEVSVLEVSGLFFAIGHEPAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain