SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35066

Length: 2027 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene35066
CAGACAGTCGATGCCCAATTCATAGCGTGGAGATTCAGTAACAGGAAGAAGCCGAAGAGAAGAAAATGGCGAAATTCTTTACTTGTCCTTCATCTCTGCATATACCCACGTCGTCCTCGGAGGTTTATTCTAATTGGAAATCACGCGCTCTGTTAAGCCTGCCATCTGATGACAGCTTTCGCAGGCAGTTGCGCCTGAACAACGGAGGGGAAGAAGGTCCTGTTAAACGGGTTATTTGTTCATCCTCTGCGCCTTCTGCGAGGAGGAGATGGTGCAACGCATCTTCGGCAATCTCCATTAACCATCATGATACATCACAATTTGAAGAGGCAACGATGAGCAGACAACTTGAGGATGACTCTGATGTGCTTATCGAGTGTAGAAACGTTCACAAGTCATTTGGGGAGAAGCACGTTCTGAGAGGAGTAAGCTTTCAGATTAGACATGGAGAAGCTGTTGGAATAATTGGACCTTCTGGCACTGGAAAGTCCACAATTCTTAAAATAATGGCAGGCCTTCTGGCTCCAGACAAGGGTGAACTATATATATGTGGGAAAAAACGACATGGCCTAATCAGTGATGAGGAAATATCAGGTTTACGAATTGGTCTGGTCTTTCAAAGTGCAGCACTCTTCGATTCACTTACGGTCCGGGAGAATGTTGGCTTTATGTTATATGAGCATTCTAACCTACCCAAGGATAGAATAGCTGAGCTTGTTACCGAAAGTCTAGAAGCTGTGGGCTTGAAGGGAGTAGAAGATCGGTTGCCATCAGAGTTGTCTGGAGGCATGAAAAAGCGAGTAGCATTGGCTCGGGCCATTATATATGATGATTCACATAAAGCAATTAAACCTGAAGTTGTAATGTATGATGAACCAACTGCTGGGCTTGATCCAATTGCATCCACTGTTGTCGAGGATCTTATCCGAGCAATGCACATTAAAGGACGTGATGCAGTGGGGAAACCTGGAAAGATTGCTTCGTATATTGTTGTAACCCATCAGCATAGCACAATAAGGCGAGCAGTTGACAGGCTGCTCTTCCTCCACGAAGGTCAGATAGTTTGGCAGGGTATGACACACGAGTTTGACACATCAACCAATCCCATTGTGCGACAGTTTGCAGCAGGGAGCTTGGAGGGACCTATTAAATACTAAACTAGTTATATGAAAAGTCTATTGTCAATAAAACTACCATCCTTACAAAATTGGTAGGTCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGACATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGCGCTTGCTTGAGACAATCAGGCCATGTACTCTATAGTGGTCTTCTGGTATTTGAAGGCATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGGAGTAACAAATTTGTTCTGGTTATGATATATTGATTATCTTGACATCTCTCTTACAAACATACTGCAATGTTTGAGTTGGATGCTGTTCTATAAGATTGCAAACATGATGCTTAAATGGCTTCTGTATTTCCATATTTATCAGTACCTTTACATTTAGGTCCATGATCAAAAACTCAGTACATCATAAACATCTTAAGTAGAAGAAACACCCTCTCCTCTTCAATTCCTGCCAGGAAATGTTTATGGAAGATTCCAGCCAGGAAACTTCTGGACAGGTATGCTAAGTCGTTTTTTAATCGTAAAATATCTCTGGTCCATTTCCTCCATGTTCATGGGAAATATGTGGGTTTCCAGACTTTTTCCAGTCTTGAAAAACTCTAACCAGTATGTCTAAGGTTCTGTAGTGGCCAACAAATGAGAGATTAAAATAATCACATT

Ace file of the UniGene sp_v3.0_unigene35066 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ABC transporter, 5'-partial [Oryza sativa Japonica Group]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Sma3	Putative ABC transporter, 5'-partial	-	-	-

Source	Gene names
Sma3	OSJNBa0039O18.1;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	ATPase activity	GO:0016887	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65410.1	ATNAP11, TGD3, NAP11 non-intrinsic ABC protein 11 chr1:24295362-24297332 FORWARD LENGTH=345	77%
RefSeq	Arabidopsis thaliana	NP_564850.1	protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002331770.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg: your sequence is longer than subject: 364 - 268

Fln protein: MAKFFTCPSSLHIPTSSSEVYSNWKSRALLSLPSDDSFRRQLRLNNGGEEGPVKRVICSSSAPSARRRWCNASSAISINHHDTSQFEEATMSRQLEDDSDVLIECRNVHKSFGEKHVLRGVSFQIRHGEAVGIIGPSGTGKSTILKIMAGLLAPDKGELYICGKKRHGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESLEAVGLKGVEDRLPSELSGGMKKRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQFAAGSLEGPIKY*

Protein Length: 365

Fln nts: CAGACAGTCGATGCCCAATTCATAGCGTGGAGATTCAGTAACAGGAAGAAGCCGAAGAGAAGAAA_-_ATGGCGAAATTCTTTACTTGTCCTTCATCTCTGCATATACCCACGTCGTCCTCGGAGGTTTATTCTAATTGGAAATCACGCGCTCTGTTAAGCCTGCCATCTGATGACAGCTTTCGCAGGCAGTTGCGCCTGAACAACGGAGGGGAAGAAGGTCCTGTTAAACGGGTTATTTGTTCATCCTCTGCGCCTTCTGCGAGGAGGAGATGGTGCAACGCATCTTCGGCAATCTCCATTAACCATCATGATACATCACAATTTGAAGAGGCAACGATGAGCAGACAACTTGAGGATGACTCTGATGTGCTTATCGAGTGTAGAAACGTTCACAAGTCATTTGGGGAGAAGCACGTTCTGAGAGGAGTAAGCTTTCAGATTAGACATGGAGAAGCTGTTGGAATAATTGGACCTTCTGGCACTGGAAAGTCCACAATTCTTAAAATAATGGCAGGCCTTCTGGCTCCAGACAAGGGTGAACTATATATATGTGGGAAAAAACGACATGGCCTAATCAGTGATGAGGAAATATCAGGTTTACGAATTGGTCTGGTCTTTCAAAGTGCAGCACTCTTCGATTCACTTACGGTCCGGGAGAATGTTGGCTTTATGTTATATGAGCATTCTAACCTACCCAAGGATAGAATAGCTGAGCTTGTTACCGAAAGTCTAGAAGCTGTGGGCTTGAAGGGAGTAGAAGATCGGTTGCCATCAGAGTTGTCTGGAGGCATGAAAAAGCGAGTAGCATTGGCTCGGGCCATTATATATGATGATTCACATAAAGCAATTAAACCTGAAGTTGTAATGTATGATGAACCAACTGCTGGGCTTGATCCAATTGCATCCACTGTTGTCGAGGATCTTATCCGAGCAATGCACATTAAAGGACGTGATGCAGTGGGGAAACCTGGAAAGATTGCTTCGTATATTGTTGTAACCCATCAGCATAGCACAATAAGGCGAGCAGTTGACAGGCTGCTCTTCCTCCACGAAGGTCAGATAGTTTGGCAGGGTATGACACACGAGTTTGACACATCAACCAATCCCATTGTGCGACAGTTTGCAGCAGGGAGCTTGGAGGGACCTATTAAATACTAA___ACTAGTTATATGAAAAGTCTATTGTCAATAAAACTACCATCCTTACAAAATTGGTAGGTCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGACATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGCGCTTGCTTGAGACAATCAGGCCATGTACTCTATAGTGGTCTTCTGGTATTTGAAGGCATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGGAGTAACAAATTTGTTCTGGTTATGATATATTGATTATCTTGACATCTCTCTTACAAACATACTGCAATGTTTGAGTTGGATGCTGTTCTATAAGATTGCAAACATGATGCTTAAATGGCTTCTGTATTTCCATATTTATCAGTACCTTTACATTTAGGTCCATGATCAAAAACTCAGTACATCATAAACATCTTAAGTAGAAGAAACACCCTCTCCTCTTCAATTCCTGCCAGGAAATGTTTATGGAAGATTCCAGCCAGGAAACTTCTGGACAGGTATGCTAAGTCGTTTTTTAATCGTAAAATATCTCTGGTCCATTTCCTCCATGTTCATGGGAAATATGTGGGTTTCCAGACTTTTTCCAGTCTTGAAAAACTCTAACCAGTATGTCTAAGGTTCTGTAGTGGCCAACAAATGAGAGATTAAAATAATCACATT

Fln Alignment:

Contig35066___KSFGEKHVLRGVSFQIRHGEAVGIIGPSGTGKSTILKIMAGLLAPDKGELYICGKKRHGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESL-EAVGLKGVEDRLPSE----LSGGMKKRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQF
D5ADF3_______________KSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFL---DYHDITKLDVLALRRRVGMLFQTPALFDG-NVADNIKYG-------PALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPISTQHIEESIGKL---------KRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMARMF

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
842			87	12	0.992554
843			12	87	0.992554
847			12	87	0.992554
848	12			87	0.992554
849		12		87	0.992554
851			12	87	0.992554
857	85		14		0.999981
863			14	78	0.999974
866	15			84	0.999986
952	10			90	0.90298
954	10		90		0.90298
968	12		87		0.992554
1001		80	20		0.995493
1002	80			20	0.995493
1004	20	80			0.995493
1006	20			80	0.995493
1008		20		80	0.995493
1012		80	20		0.995493
1013			20	80	0.995493
1014			80	20	0.995493
1016	20			80	0.995493
1019	20	80			0.995493
1021			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain