SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35052

Length: 1973 nt

UniGene Fasta

>sp_v3.0_unigene35052
CGGGAGTATTGATTGATAACCATTCAAATTAGTAAGAGATTGGGGATAGTTGCGCTCCGAGGAAAGCATTGAATTGGGGATAATGGCGGAAACTAATGTCACATATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTGACGATGTTACTGCTTCAACTCTACAGAATAGTGTGGAGGGAGGACAGTCGAGGCTACAATTTGCCTCCCGGTTCCCGTGGGTGGCCATTGATAGGAGAGACCTTGAGCTTCATGCGAGGGATTAATTCCATTTCTCAACCACGCCAATTCATTCAAGATCGAGAGCAAAGGTATGGGAAGATATTCAGAACAAATTTGTTTGGAAGATCTCGAATGATCGTGTCTGTGGACCCAGAATTCAACAAGTATATTCTGCAACACGAAGGCAGGCTGGTTCAATCCAGCTATCTGAGACCTTTTCGAAAACTCATCGGCAAATACGGTTTGCTTTCGGTGTACGGAGAACTCCAGAAGAAGCTCCACGGAACGGCCGTAAATTTCCTGAGGTTCGAGAGGCTGAGTGTGCACTTCATGGAGGACATACAGAACCTTATGCACAGCACCTTCGCCCAGTGGCAAGCCAAGGGGCATATCCATCTTCATCATGAGTGCCATCAGTTTGTTCTGAACTTGATGGCAAAACAATTGCTGGACTTATCTCCGTCCAAGGAGACGGAAGAGATCGGTAAAGCATTCGGCGATTTTTCTAAATCTTTCGTTGTCCTTCCCATTAGAATCCCGGGTACAGCGTACTGGAAAGGATTGAAGGCCAGAGATTTTCTGATGAAAAAGATTTATGCGAGTATAAAGTACAGAAGGGAGCATCCAGAAGTTGTCCATAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTCGCATTCAGAAGAAATTATAGCAGATTTTGTACTGTTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTCAACGATGGCATTTGCTATCAAATTTCTCACGGACTGTCCCCAGGCACTTCGGGAGCTGAAGGCTGAACACAACGCTCTGTTAAAGAGAAAGGGGAGTCCAAGAAACCAAAACCTCACTTGGGATGACTACCAGTCATTGAAATTCACCCAGTGTGTCATAAATGAAACACATCGTCTCGCCAACGTTGCTCCAGCGGTTTTCAGAGAAGCAATAGCAGACATTAAAATTAAAGGAGGCTTTGTCATCCCAAAAGGGTGGTCAGTCTTGGTGCTTATGAACGGCATCCATCTGGACGACAAGTACCATTCTTCTCCGCTCAAGTTTGACCCATGGCGTTGGCAACAGATTCTGGAAAATAATGAGCTCTACAAGAACCCCTCTTTTATGCCTTTTGGAGGGGGGCTCAGGCTCTGTCCAGGAATGCATCTGGCAAAACTTGAGCTGGGCCTCTTTCTCCATCACTTCATCACCAAATTCAGATGGAAGCCACTGGATGATGATAAGATCTCCTACTTTCCGGTTTCTCACTTGACTAAAGGCTTTCCGATCAGTCTATATCCTCAAGAACAAATGGATGATTAATCGCAGTATAATAGGATTTGATTGATGCAGTATGGAGTATTAGAAACCGTAAATAAGTTTCAAAGAATGGATAATTAATCGCGTTATAATAGGATTTGCTTCATGCAGTGTGGAGTATTAAAAACAGTCAATAAGTATGAAACTTAAAACAATAATTGCCCCGCTGTGGACATATAAATATCATGTCTGTTGGTATGAGTAGATTTCAAGGATATTTATGTATTTCCTGTATTGAAGCGTGAGGATAATGTATTAATCATATATTTATGTATTTCCTGTATTGAACCATGAGGACTTTGATTTTCATGGGGATAATGTATTAATCAGCTATTATTGGATATCCTTGTTTAAGTAAGGTTCCAAGCGATAAAAAAGTTGTTTAAGCAGGGTTCCAAGTTGTGGATATATTGATAAATAAATTATAATT

Ace file of the UniGene sp_v3.0_unigene35052

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	0.0	72%
FL-Next	tr=CYP720B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%

Source	Gene names
Sma3	CYP720A1; CYP720B1; CYP720B2; GSVIVT00013859001; LOC_Os03g12660; OJ1626B05.9; Os03g0227700; OsDWARF4; OsI_10612; POPTRDRAFT_585891; POPTRDRAFT_820409; RCOM_0399170; RCOM_1607300;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	brassinosteroid biosynthetic process	GO:0016132	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E5FA69

Fln msg:

Fln protein: MAETNVTYSWLVGFVCFVLTMLLLQLYRIVWREDSRGYNLPPGSRGWPLIGETLSFMRGINSISQPRQFIQDREQRYGKIFRTNLFGRSRMIVSVDPEFNKYILQHEGRLVQSSYLRPFRKLIGKYGLLSVYGELQKKLHGTAVNFLRFERLSVHFMEDIQNLMHSTFAQWQAKGHIHLHHECHQFVLNLMAKQLLDLSPSKETEEIGKAFGDFSKSFVVLPIRIPGTAYWKGLKARDFLMKKIYASIKYRREHPEVVHNDFLGELLKEDSHSEEIIADFVLFLLFAGHETSASTMAFAIKFLTDCPQALRELKAEHNALLKRKGSPRNQNLTWDDYQSLKFTQCVINETHRLANVAPAVFREAIADIKIKGGFVIPKGWSVLVLMNGIHLDDKYHSSPLKFDPWRWQQILENNELYKNPSFMPFGGGLRLCPGMHLAKLELGLFLHHFITKFRWKPLDDDKISYFPVSHLTKGFPISLYPQEQMDD*

Protein Length: 489

Fln nts: CGGGAGTATTGATTGATAACCATTCAAATTAGTAAGAGATTGGGGATAGTTGCGCTCCGAGGAAAGCATTGAATTGGGGATA_-_ATGGCGGAAACTAATGTCACATATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTGACGATGTTACTGCTTCAACTCTACAGAATAGTGTGGAGGGAGGACAGTCGAGGCTACAATTTGCCTCCCGGTTCCCGTGGGTGGCCATTGATAGGAGAGACCTTGAGCTTCATGCGAGGGATTAATTCCATTTCTCAACCACGCCAATTCATTCAAGATCGAGAGCAAAGGTATGGGAAGATATTCAGAACAAATTTGTTTGGAAGATCTCGAATGATCGTGTCTGTGGACCCAGAATTCAACAAGTATATTCTGCAACACGAAGGCAGGCTGGTTCAATCCAGCTATCTGAGACCTTTTCGAAAACTCATCGGCAAATACGGTTTGCTTTCGGTGTACGGAGAACTCCAGAAGAAGCTCCACGGAACGGCCGTAAATTTCCTGAGGTTCGAGAGGCTGAGTGTGCACTTCATGGAGGACATACAGAACCTTATGCACAGCACCTTCGCCCAGTGGCAAGCCAAGGGGCATATCCATCTTCATCATGAGTGCCATCAGTTTGTTCTGAACTTGATGGCAAAACAATTGCTGGACTTATCTCCGTCCAAGGAGACGGAAGAGATCGGTAAAGCATTCGGCGATTTTTCTAAATCTTTCGTTGTCCTTCCCATTAGAATCCCGGGTACAGCGTACTGGAAAGGATTGAAGGCCAGAGATTTTCTGATGAAAAAGATTTATGCGAGTATAAAGTACAGAAGGGAGCATCCAGAAGTTGTCCATAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTCGCATTCAGAAGAAATTATAGCAGATTTTGTACTGTTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTCAACGATGGCATTTGCTATCAAATTTCTCACGGACTGTCCCCAGGCACTTCGGGAGCTGAAGGCTGAACACAACGCTCTGTTAAAGAGAAAGGGGAGTCCAAGAAACCAAAACCTCACTTGGGATGACTACCAGTCATTGAAATTCACCCAGTGTGTCATAAATGAAACACATCGTCTCGCCAACGTTGCTCCAGCGGTTTTCAGAGAAGCAATAGCAGACATTAAAATTAAAGGAGGCTTTGTCATCCCAAAAGGGTGGTCAGTCTTGGTGCTTATGAACGGCATCCATCTGGACGACAAGTACCATTCTTCTCCGCTCAAGTTTGACCCATGGCGTTGGCAACAGATTCTGGAAAATAATGAGCTCTACAAGAACCCCTCTTTTATGCCTTTTGGAGGGGGGCTCAGGCTCTGTCCAGGAATGCATCTGGCAAAACTTGAGCTGGGCCTCTTTCTCCATCACTTCATCACCAAATTCAGATGGAAGCCACTGGATGATGATAAGATCTCCTACTTTCCGGTTTCTCACTTGACTAAAGGCTTTCCGATCAGTCTATATCCTCAAGAACAAATGGATGATTAA___TCGCAGTATAATAGGATTTGATTGATGCAGTATGGAGTATTAGAAACCGTAAATAAGTTTCAAAGAATGGATAATTAATCGCGTTATAATAGGATTTGCTTCATGCAGTGTGGAGTATTAAAAACAGTCAATAAGTATGAAACTTAAAACAATAATTGCCCCGCTGTGGACATATAAATATCATGTCTGTTGGTATGAGTAGATTTCAAGGATATTTATGTATTTCCTGTATTGAAGCGTGAGGATAATGTATTAATCATATATTTATGTATTTCCTGTATTGAACCATGAGGACTTTGATTTTCATGGGGATAATGTATTAATCAGCTATTATTGGATATCCTTGTTTAAGTAAGGTTCCAAGCGATAAAAAAGTTGTTTAAGCAGGGTTCCAAGTTGTGGATATATTGATAAATAAATTATAATT

Fln Alignment:

Contig35052___MAETNVTYSWLVGFVCFVLTMLLLQLYRIVWREDSRGYNLPPGSRGWPLIGETLSFMRGINSISQPRQFIQDREQRYGKIFRTNLFGRSRMIVSVDPEFNKYILQHEGRLVQSSYLRPFRKLIGKYGLLSVYGELQKKLHGTAVNFLRFERLSVHFMEDIQNLMHSTFAQWQAKGHIHLHHECHQFVLNLMAKQLLDLSPSKETEEIGKAFGDFSKSFVVLPIRIPGTAYWKGLKARDFLMKKIYASIKYRREHPEVVHNDFLGELLKEDSHSEEIIADFVLFLLFAGHETSASTMAFAIKFLTDCPQALRELKAEHNALLKRKGSPRNQNLTWDDYQSLKFTQCVINETHRLANVAPAVFREAIADIKIKGGFVIPKGWSVLVLMNGIHLDDKYHSSPLKFDPWRWQQILENNELYKNPSFMPFGGGLRLCPGMHLAKLELGLFLHHFITKFRWKPLDDDKISYFPVSHLTKGFPISLYPQEQMDD
E5FA69_______________MAET-LAYSWLVGLVCFVLGLLLLQLYKLVWRVDNRGYKLPPGSTGWPVIGETISFFRGINSTAQPRQFIQDREQRYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKFGLLSVHGDLQKKLHGTAVNLLRFERLSVDFMEDIQNLLHITLAKWQAKRDVHLQEECHQLVLNLMAKQLLDLSPSKETEEICEAFGHFSDALLSVPIRIPGTAYARGFKAREFLIKKIYEGIEDRRKHPQAVHNDLLTKLLKEDSLSEEVIADFILFLLFAGHETSSRSMSFAIKFLTGCPRALEELKAEHDALLKRKGKQKNQKLNWDDYQSMKFTQCVINETLRLGNFGPGVFREAKEDIKTKGGFMIPRGWTVYVFLTGTHLDNKYHSSALTFDPWRWQQHLQDQELSKNPSFMPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALQHDKISYFPFPRLIKGLPIRLHLRERLDD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1732	10		90		0.90298
1734			10	90	0.90298
1758		10		90	0.90298
1773		11		88	0.923564
1813		11		88	0.923564
1831	85		14		0.993533
1854		14	85		0.993533
1885	16	83			0.994512
1887		16		83	0.994512
1890		16		83	0.994512
1891	16			83	0.994512
1892	16			83	0.994512
1897	83			16	0.994512
1910	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain