SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35045

Length: 673 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene35045 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	3.0e-09	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Plastid-specific 30S ribosomal protein 2	-	-	9.67e-09	-

Source	Gene names
Sma3	AT3G52150; At3g52150; At3g52380; At3g52590/F22O6.30; F22O6_240; F4F15.260; GSVIVT00008860001; Os09g0279500; OsI_30679; OsJ_28655; P0651G05.3; P0701E06.36; POPTRDRAFT_1087747; PSRP2; RCOM_1526810;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52150.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr3:19342074-19343090 FORWARD LENGTH=253	2.0e-29	56%
RefSeq	Arabidopsis thaliana	NP_001030841.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	2.0e-29	56%
RefSeq	Populus trichocarpa	XP_002314019.1	predicted protein [Populus trichocarpa]	3.0e-37	70%

Full-Lengther Next Prediction

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain