SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35033

Length: 536 nt

UniGene Fasta

>sp_v3.0_unigene35033
AATGTCAAATGGATGTATAGTCTTGTGGCAACTAAGCTTAGCCTATTGCGTCCCTGTCACAAATGCTCTTCTTGCAAAGCTTCGACGAATATGACAGCCTGCAGTCGATACAATTTGATGGCTGTGAAGTTTCTAGCTCAGGTTTGAAGTCTTTTGGGAAAAGCCGCAAGTCTCTGATGGAATTGAGCTTAAGCAAGTGTACTGGAGTGACAGATGAAGGAATCTCTGCACTAGTGGGAGGCTGCACAGGGTTGAAAATTCTAGATATCACCTGTTGCCGTGATCTCACTGATGTTGCTATCACAGCTGTTGCAACATCTTGTGGAAATCTTTCATGTCTTAAGATGGAATCCTGTGCCCTGGTCACTGAGAGAAGCTTATATATGCTAGGAGATCGCTGCCCCTTTCTAGAAGTACTAGATCTCACCGATTGTAGTGTAAGCAATACAGGACGGAAATCCATTTCCAGGTGCACTGGATTAACTACCTTGAAACTAGGCCTATGCGAAAATATATCCAATGAGGGTATAACCCAT

Ace file of the UniGene sp_v3.0_unigene35033

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	2.0e-33	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	22%

Source	Gene names
Sma3	At5g01720; At5g27920; At5g27920/F14I23_80; F7A7.240; FBL3; GSVIVT00022689001; GSVIVT00023993001; LOC_Os11g01780; LOC_Os12g01760; Os12g0108500; OsI_34818; OsI_37183; OsJ_32666; OsJ_34957; PHYPADRAFT_147551; PHYPADRAFT_186728; POPTRDRAFT_560962; POPTRDRAFT_

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01720.1	RNI-like superfamily protein chr5:267118-270391 REVERSE LENGTH=665	5.0e-40	48%
RefSeq	Arabidopsis thaliana	NP_568094.2	F-box/LRR-repeat protein 3 [Arabidopsis thaliana]	6.0e-40	48%
RefSeq	Populus trichocarpa	XP_002323638.1	predicted protein [Populus trichocarpa]	2.00386e-43	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 158 - 335

Fln protein: MLFLQSFDEYDSLQSIQFDGCEVSSSGLKSFGKSRKSLMELSLSKCTGVTDEGISALVGGCTGLKILDITCCRDLTDVAITAVATSCGNLSCLKMESCALVTERSLYMLGDRCPFLEVLDLTDCSVSNTGRKSISRCTGLTTLKLGLCENISNEGITH

Protein Length: 159

Fln nts: AATGTCAAATGGATGTATAGTCTTGTGGCAACTAAGCTTAGCCTATTGCGTCCCTGTCACAA_-_ATGCTCTTCTTGCAAAGCTTCGACGAATATGACAGCCTGCAGTCGATACAATTTGATGGCTGTGAAGTTTCTAGCTCAGGTTTGAAGTCTTTTGGGAAAAGCCGCAAGTCTCTGATGGAATTGAGCTTAAGCAAGTGTACTGGAGTGACAGATGAAGGAATCTCTGCACTAGTGGGAGGCTGCACAGGGTTGAAAATTCTAGATATCACCTGTTGCCGTGATCTCACTGATGTTGCTATCACAGCTGTTGCAACATCTTGTGGAAATCTTTCATGTCTTAAGATGGAATCCTGTGCCCTGGTCACTGAGAGAAGCTTATATATGCTAGGAGATCGCTGCCCCTTTCTAGAAGTACTAGATCTCACCGATTGTAGTGTAAGCAATACAGGACGGAAATCCATTTCCAGGTGCACTGGATTAACTACCTTGAAACTAGGCCTATGCGAAAATATATCCAATGAGGGTATAACCCAT

Fln Alignment:

Contig35033___LQSFDEYDSLQSIQFDGC-EVSSSGLKSFGKSRKSLMELSLSKCTGVTDEGISALVGGCTGLKILDITCCRDLTD-------------------------VAITAVATSCGNLSCLKMESCALVTERSLYMLGDRCPFLEVLDLTDCSVSNTGRKSISRCXXXXXXXXXXCENISNEG
D5A998_______________LKSISRCSELITLNLGFCLNISAEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain