SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34984

Length: 2149 nt

UniGene Fasta

>sp_v3.0_unigene34984
AATGTGTTCGTTCAAGTGGATGGACACAAGGAATATTTGCAAATTTTGCAGCAGAAAGTATGGTCCCAAAGGGTCCAGAATGGGGAGGAGGCAACTGGGAGATCAAGACTCCTCCAGAGTCCAAGAATATACCACAATGGGAACTCTCTGGAGAAGTCATGCCATACATGAAGACTTCTGCTGGGTTCATTCCATCCATTATTCCTGATCATATTGGAGTCTACCTGGGCACAATGAAAGGTAGGGGCACCATTATAGATGTTAGAGATGACACTTCACTGAAGAGATTCACTCAAAGCGTGAATGGTGAAAGCAAGACTGAAGAATTACCTCTGGCTTTGATTAATTCTGAATCAAGCAACTTGAAGAGATCTGATGACGGAATTGTGAAAGGACCTCCTGTAACTGCTTCACAGAGCCTTAGTAAGGCATTCCAAGGAGATATGGCTGCAGATAAGCAGGCAAGAGCTGCAGAAGAATTTAAGCTTGGGGTATACAATCAGTCTCAAAATCAGACCTTTCAGGGTACCCCCAGTAGTGGACAACCTCCTAATTATCAAGGGGTGCCAACTGATTTTGGTCTCTTTGGTAGTGGTGTACCTCCCCAAGTGTCCCAGTCTAGTGGAATCAGTTCTGGCCTGTCAATGGATGGTACACCTGTTCAAGTTTTGGGCCTTCCTGATGGGGGCATTCCTCCACACGGGCAAGTTACTCCAGTGTCAACCTCATCATCAGCTATTGATCTTGGTTTATTTGAAACACCTACTTCAGCATTAGCGAGTAAGAATAATGCCGAAACTCCAGTGCTTGCTTCTGCAAAAGGTGGTACAACGAATCTTGGGCGTCCCAACTCACCACCAATTGCTGTACGACCGGGACAGGTGCCTCGTGGAGCTGCAGCATCAAAGTGCTTTAAAGCTGGACTTGCTCATCTTGAACAAAACCAACTTTCAGATGCAATGTCCTGTCTGGATGAGGCTTTCTTAGCATTGGCAAAAGATCAGTCACTAGGAGTTGACATCAGAGCTCAAGCCTCGATTTGTGCACAGTACAAGATTGCTGTCTTACTACTTCAGGAAATTTCTCGCCTACAGCGTGTGCAAGGGCCTAGTGCTGTCAGTGCGAAAGAGGAAATGGCCAGACTTTCTCGCCATCTTGGCTCTTTGCCTCTTCTTGCAAAGCACCGAATAAGTTGCATCCGAACTGCTATTAAAAGGAATATGGATGTGCAGAACTATGCATTTGCAAAATCTGACCTTGATCTTCTCCTCTCAAAGGCCCCTCCTAACAAACAGGATGAACTCAGAAGCTTGATCAATGTATGCACACAAAGAGGTCTCACTGATAAATCCATTGATCCGACAGAGGATGCCTCACAGTTTTGTTCTGCAACACTTGGCCGCTTGCCAACAATAGGACATGATGTCTGTGATCTATGTGGTGCAAAATTTTCAGCTCTTTCATCACCAGGCTGTATAATATGTGGTATGGGAAGTATTAAAAGATCCGATGCAGTGGCAGGCCCAGTTCCATCACCATTTGGTTAAGAGGCAGGAAGAGCTAGTTTGCCAGCTAAAGAGTGAAGATAGTGAATTCTTCATGCTACATTTTCGAGCGAAAGAGAAACATTTCATGGGGAAATCAATTATGACATATGGAGGCAATGTTTTCTTGTAAAGAAAAATGAGTGTAGGGTTGAGCAGAGCAAAGACTTGGAAAAGTGTGTGATTATACTAGTTTTTCCCCTTTGATAAACACCTTACAAGAGAATAAATGGTAGCTCCTGGTATTTATGGTTTTCTTCCAACAGAAATGTAGGTGGCACAAGTTAGAAATGGCATTTGTGCCCAGTTAACAATAGAGGAAATGATTTTATCTGACTCCAGCTTTATTCATGAATATTTTGGTAGGCCAACAGAAGCCTTGAAAAAATAGAAATGCAGCAAATGGACTTACAATAGTTGACATGATTGTGAAAGAGTCTGTGAGGCTATATCCACTAGTAATTGCTTTGACTGTAAGAACTAACAAAGCTACACTGCTTGGAAAGCTTAATTTTCCACAAGAGATGGAGTTAATGATTGAAATCTTAGCCATTCACCATGATTAGGCCTTGTGGGTGATGATGTGAATGAATTCAATATCCAAA

Ace file of the UniGene sp_v3.0_unigene34984

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	p450 domain containing protein	-	-	4.0e-05	26%
FL-Next	tr=Os09g0408000 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	67%

Source	Gene names
Sma3	At3g50600; GSVIVT00011911001; Os09g0408000; OsI_31321; OsJ_29312; P0465E03.10; PHYPADRAFT_124044; RCOM_0601590; T20E23_200; vp7;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein chr3:18771292-18779220 FORWARD LENGTH=1614	0.0	66%
RefSeq	Arabidopsis thaliana	NP_190628.6	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q69N38

Fln msg: your sequence is longer than subject: 496 - 417

Fln protein: MVPKGPEWGGGNWEIKTPPESKNIPQWELSGEVMPYMKTSAGFIPSIIPDHIGVYLGTMKGRGTIIDVRDDTSLKRFTQSVNGESKTEELPLALINSESSNLKRSDDGIVKGPPVTASQSLSKAFQGDMAADKQARAAEEFKLGVYNQSQNQTFQGTPSSGQPPNYQGVPTDFGLFGSGVPPQVSQSSGISSGLSMDGTPVQVLGLPDGGIPPHGQVTPVSTSSSAIDLGLFETPTSALASKNNAETPVLASAKGGTTNLGRPNSPPIAVRPGQVPRGAAASKCFKAGLAHLEQNQLSDAMSCLDEAFLALAKDQSLGVDIRAQASICAQYKIAVLLLQEISRLQRVQGPSAVSAKEEMARLSRHLGSLPLLAKHRISCIRTAIKRNMDVQNYAFAKSDLDLLLSKAPPNKQDELRSLINVCTQRGLTDKSIDPTEDASQFCSATLGRLPTIGHDVCDLCGAKFSALSSPGCIICGMGSIKRSDAVAGPVPSPFG*

Protein Length: 497

Fln nts: AATGTGTTCGTTCAAGTGGATGGACACAAGGAATATTTGCAAATTTTGCAGCAGAAAGT_-_ATGGTCCCAAAGGGTCCAGAATGGGGAGGAGGCAACTGGGAGATCAAGACTCCTCCAGAGTCCAAGAATATACCACAATGGGAACTCTCTGGAGAAGTCATGCCATACATGAAGACTTCTGCTGGGTTCATTCCATCCATTATTCCTGATCATATTGGAGTCTACCTGGGCACAATGAAAGGTAGGGGCACCATTATAGATGTTAGAGATGACACTTCACTGAAGAGATTCACTCAAAGCGTGAATGGTGAAAGCAAGACTGAAGAATTACCTCTGGCTTTGATTAATTCTGAATCAAGCAACTTGAAGAGATCTGATGACGGAATTGTGAAAGGACCTCCTGTAACTGCTTCACAGAGCCTTAGTAAGGCATTCCAAGGAGATATGGCTGCAGATAAGCAGGCAAGAGCTGCAGAAGAATTTAAGCTTGGGGTATACAATCAGTCTCAAAATCAGACCTTTCAGGGTACCCCCAGTAGTGGACAACCTCCTAATTATCAAGGGGTGCCAACTGATTTTGGTCTCTTTGGTAGTGGTGTACCTCCCCAAGTGTCCCAGTCTAGTGGAATCAGTTCTGGCCTGTCAATGGATGGTACACCTGTTCAAGTTTTGGGCCTTCCTGATGGGGGCATTCCTCCACACGGGCAAGTTACTCCAGTGTCAACCTCATCATCAGCTATTGATCTTGGTTTATTTGAAACACCTACTTCAGCATTAGCGAGTAAGAATAATGCCGAAACTCCAGTGCTTGCTTCTGCAAAAGGTGGTACAACGAATCTTGGGCGTCCCAACTCACCACCAATTGCTGTACGACCGGGACAGGTGCCTCGTGGAGCTGCAGCATCAAAGTGCTTTAAAGCTGGACTTGCTCATCTTGAACAAAACCAACTTTCAGATGCAATGTCCTGTCTGGATGAGGCTTTCTTAGCATTGGCAAAAGATCAGTCACTAGGAGTTGACATCAGAGCTCAAGCCTCGATTTGTGCACAGTACAAGATTGCTGTCTTACTACTTCAGGAAATTTCTCGCCTACAGCGTGTGCAAGGGCCTAGTGCTGTCAGTGCGAAAGAGGAAATGGCCAGACTTTCTCGCCATCTTGGCTCTTTGCCTCTTCTTGCAAAGCACCGAATAAGTTGCATCCGAACTGCTATTAAAAGGAATATGGATGTGCAGAACTATGCATTTGCAAAATCTGACCTTGATCTTCTCCTCTCAAAGGCCCCTCCTAACAAACAGGATGAACTCAGAAGCTTGATCAATGTATGCACACAAAGAGGTCTCACTGATAAATCCATTGATCCGACAGAGGATGCCTCACAGTTTTGTTCTGCAACACTTGGCCGCTTGCCAACAATAGGACATGATGTCTGTGATCTATGTGGTGCAAAATTTTCAGCTCTTTCATCACCAGGCTGTATAATATGTGGTATGGGAAGTATTAAAAGATCCGATGCAGTGGCAGGCCCAGTTCCATCACCATTTGGTTAA___GAGGCAGGAAGAGCTAGTTTGCCAGCTAAAGAGTGAAGATAGTGAATTCTTCATGCTACATTTTCGAGCGAAAGAGAAACATTTCATGGGGAAATCAATTATGACATATGGAGGCAATGTTTTCTTGTAAAGAAAAATGAGTGTAGGGTTGAGCAGAGCAAAGACTTGGAAAAGTGTGTGATTATACTAGTTTTTCCCCTTTGATAAACACCTTACAAGAGAATAAATGGTAGCTCCTGGTATTTATGGTTTTCTTCCAACAGAAATGTAGGTGGCACAAGTTAGAAATGGCATTTGTGCCCAGTTAACAATAGAGGAAATGATTTTATCTGACTCCAGCTTTATTCATGAATATTTTGGTAGGCCAACAGAAGCCTTGAAAAAATAGAAATGCAGCAAATGGACTTACAATAGTTGACATGATTGTGAAAGAGTCTGTGAGGCTATATCCACTAGTAATTGCTTTGACTGTAAGAACTAACAAAGCTACACTGCTTGGAAAGCTTAATTTTCCACAAGAGATGGAGTTAATGATTGAAATCTTAGCCATTCACCATGATTAGGCCTTGTGGGTGATGATGTGAATGAATTCAATATCCAAA

Fln Alignment:

Contig34984___GTPVQVLGLPDGGIPPHGQVTPVSTSSSAIDLGLFETPTSALASKNNAETPVLASAKGGTTNLGRPNSP-PIAVRPGQVPRGAAASKCFKAGLAHLEQNQLSDAMSCLDEAFLALAKDQSLGVDIRAQASICAQYKIAVLLLQEISRLQRVQGPSAVSAKEEMARLSRHLGSLPLLAKHRISCIRTAIKRNMDVQNYAFAKSDLDLLLSKAPPNKQDELRSLINVCTQRGLTDKSIDPTEDASQFCSATLGRLPTIGHDVCDLCGAKFSALSSPGCIICGMGSIKRSDAVAGPVPSPFG
Q69N38_______________GMPMDPISLPDGGVPPQSQPLPSQPQALPPQPHGFQPAIPAMSQPID-----LSALEGPGQGKQAPRPPAPTAVRPGQVPRGAPAAECYKMGLAHLEQNQLTDALSCLDEAFLALAKDQSREADIKAQATICAQYKIAVALLQEIARLQRVQGAGALSAKEEMARLSRHLASLPIQAKHRINCIRTAIKRNMEVQNFAYAKQMLDLLYSKAPPSKQDELKSLIDMCVQRGLTNKSIDPFEDPSQFCAVTLSRLSTIGHDVCDLCGAKFSALSAPGCVICGMGSIKRSDALAGPVPSPFG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
957		14		85	0.993533
960	85		14		0.993533
1002		16		83	0.994512
1596	33			66	0.997452
1725		33		66	1.0
1735		33	66		1.0
1738			33	66	1.0
2017		16		83	0.999991
2062		80		20	0.999996
2085	10		90		0.90298
2087	20	80			0.999996
2088	62	37			1.0
2106	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain