SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34980

Length: 857 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34980

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	0.0	94%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	0.0	50%
Sma3	Heat shock protein 90	-	-	1.796e-35	-

Source	Gene names
Sma3	At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; GSVIVT00002550001; GSVIVT00004280001; GSVIVT00033436001; HSC80; HSP81-1; HSP81-2; HSP81-3; HSP81.2; HSP82; HSP83; HSP83A; HSP90; HSP90-1; HSP90-2; HSP90A; Hsp90; LOC_Os09g30438; MDA7.5; MDA7.7

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	protein stabilization	GO:0050821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52640.1	HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 heat shock protein 90.1 chr5:21352542-21355147 FORWARD LENGTH=705	94%
RefSeq	Arabidopsis thaliana	NP_200076.1	heat shock protein 81-1 [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002327494.1	predicted protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 192 aas, your sequence is shorter than subject: 285 - 834

Fln protein: CKGSVA*MESRQQV*KPIWMRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYESFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEETEEEKKKREE

Protein Length: 286

Fln nts: AATGTAAAGGAAGTGTCGCATGAATGGAGTCTCGTCAACAAGTCTAGAAGCCCATCTGGATGAGAAAGCCAGAGGAGATTACAAAGGAAGAGTATGCATCGTTCTATAAGAGTCTCACCAATGATTGGGAGGATCACTTGGCCGTGAAGCATTTCTCTGTAGAGGGTCAATTGGAGTTCAAGGCTGTTCTCTTTGTTCCGAAGAGGGCTCCATTCGATCTCTTTGACACAAAGAAGAAGCTCAACAACATTAAGCTGTATGTAAGAAGGGTTTTCATAATGGACAACTGTGAAGAACTTATTCCCGAATACCTGGGTTTTGTGAAAGGTGTGGTGGACTCTGATGATCTGCCCCTCAATATCTCCAGGGAAATGCTGCAGCAGAACAAGATTCTGAAGGTAATTAGGAAGAATTTGGTAAAGAAGTGTATTGAAATGTTTAACGAGATCGCCGAGAACAAAGAGGACTATGCCAAGTTCTATGAGTCATTTTCGAAGAACTTGAAATTGGGAATACACGAAGACAGCCAGAACAGGGCTAAGCTCGCGGATCTGCTGAGATATCACTCGACGAAGAGTGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCAGGATGAAAGAGGGGCAGAAGGACATTTATTATATCACCGGCGAGAGCAAGAAGGCGGTGGAGAATTCTCCCTTCCTGGAGAGGCTGAAGCGGAAGGGTTATGAGGTCCTGTTCATGGTGGATGCCATCGATGAGTACGCCGTAGGTCAGCTCAAGGAGTATGACGGGAAGAAGCTTGTTTCTGCTACGAAAGAAGGGCTGAAGCTGGAGGAGACAGAGGAGGAGAAGAAAAAGAGGGAAGAG

Fln Alignment:

Contig34980___KPIWMRKPEEITKEEYASFYKSLTNDWEDH--LAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLN-NIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKED-----------------------YAKFYESFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKK
A7YAU9_______________KAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFEEFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
451	64		35		1.0
452		85		14	0.999981
453		85		14	0.999981
553		55		44	1.0
802	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain