SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34973

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34973

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] emb\|CAB88040.1\| putative protein [Arabidopsis thaliana] dbj\|BAB85646.1\| inflorescence and root apices receptor-like kinase [Arabidopsis thaliana] dbj\|BAB85647.1\| inflorescence and root	-	-	0.0	42%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	33%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	8.002e-06	-

Source	Gene names
Sma3	AT3G28040; AT5G01890; At3g28040; At3g56370; At5g01890; GSVIVT00017830001; GSVIVT00029456001; GSVIVT00033546001; GSVIVT00037496001; IRK; LOC_Os03g21730; LRR-RLK; MpRLK27; OJ1294_F06.12; OSJNBa0018K15.10; Os01g0821900; Os01g0957100; Os03g0335500; Os05g04783

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56370.1	Leucine-rich repeat protein kinase family protein chr3:20899403-20902390 REVERSE LENGTH=964	46%
RefSeq	Arabidopsis thaliana	NP_191196.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002325929.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 578 aas, your sequence is shorter than subject: 472 - 1145

Fln protein: NVSAAAARAALRIRLAKPPLSARFIHTTARRPQQAAAAQRFTDNFLANMSSLQNARLINVSYNNLSGPIPESLLGCSRLYSVDFSRNGFTGSIPGELFQLGLQNIYLSWNSLTGSIPQAGSPKLYQFLEELDLSHNRLSGEIPPSITQCSNLKLLSMSDNLIASKIPPEIGNLKSLVFLDLSYNHLFGAIPARLGNASALSVLQLDGNSLSGRIPAEIGECSSLALLSLAHNSLTGNVPKELAKLSRLTKLNLAMNNFTGELPQQLGNLGHLLSVNISHNKLKGRLPAGGVFNTLNWTSLEGNAGLCGSGVNVTCPMVMPKPIVLNPNTSGSPTGGGIQMIKSRRSRIVLSVSAIIAISAAATIAFGVVAVTILNIRAQSNSRSMNLMLDSFSQSPSTDMALGKLVMFTPNSDHASEDWMTSAHALINKDCELGRGGFGTVYKAVLGDGRVVAIKKLMVSSLVKSQEDFEKE

Protein Length: 473

Fln nts: AATGTCTCGGCGGCAGCGGCCCGGGCAGCTCTTAGAATTCGGCTGGCCAAACCTCCCTTAAGTGCCCGTTTCATCCACACTACAGCCAGAAGGCCCCAGCAAGCCGCTGCTGCACAACGCTTTACAGACAACTTTCTGGCCAACATGTCTTCCCTGCAGAATGCTAGGCTCATCAATGTGTCATATAATAATCTCTCGGGACCCATTCCGGAATCTTTACTGGGCTGTAGTAGGCTTTACTCGGTTGATTTCAGCAGGAATGGCTTTACCGGAAGCATTCCTGGGGAGTTGTTTCAGTTGGGTTTACAGAACATATATCTGTCATGGAATTCTCTCACGGGGAGCATCCCCCAAGCTGGTTCTCCAAAATTATACCAATTTCTGGAAGAACTGGATCTGTCACACAATAGGTTGAGTGGGGAAATACCTCCATCAATCACTCAGTGCTCCAATTTAAAGCTATTGAGCATGTCAGATAACCTTATCGCCTCCAAGATTCCGCCAGAGATTGGTAATCTGAAGTCGTTGGTGTTTTTGGATCTGAGCTATAACCATCTGTTTGGAGCCATACCTGCGAGACTTGGTAATGCCAGTGCTCTTTCAGTGTTGCAACTGGATGGAAATTCCTTATCAGGACGAATTCCTGCAGAAATTGGTGAATGTTCATCTCTGGCTTTGCTGAGCTTGGCACACAATAGTTTGACTGGAAATGTACCCAAGGAATTAGCCAAATTGAGTCGACTGACAAAGCTTAATTTGGCAATGAACAATTTTACTGGAGAATTGCCACAGCAATTAGGGAATTTGGGTCATCTATTATCGGTAAACATTTCCCACAACAAACTTAAAGGCAGGTTACCAGCAGGTGGTGTATTCAACACACTGAACTGGACTTCTCTCGAAGGAAATGCGGGCCTATGTGGATCGGGAGTTAATGTTACTTGTCCCATGGTTATGCCTAAGCCAATAGTTCTAAATCCAAATACAAGCGGGAGTCCAACTGGAGGAGGAATTCAAATGATTAAATCTAGACGCAGCAGAATTGTTCTTAGTGTTTCTGCAATAATTGCAATATCTGCAGCAGCTACGATTGCATTTGGTGTGGTTGCTGTGACTATCCTGAATATAAGAGCACAGTCCAATTCAAGATCGATGAATCTTATGCTTGATAGTTTTTCTCAGTCCCCATCTACTGATATGGCTCTAGGAAAACTGGTTATGTTTACACCCAACTCGGATCATGCATCTGAGGATTGGATGACTAGTGCTCATGCGTTGATTAACAAAGATTGTGAGCTTGGAAGGGGAGGGTTTGGCACTGTGTACAAAGCAGTCCTAGGGGACGGGCGGGTAGTTGCTATAAAGAAGCTGATGGTTTCAAGTTTGGTTAAATCACAAGAAGACTTTGAGAAGGAGA

Fln Alignment:

Contig34973___TDNFLANMSSLQNARLINVSYNNLSGPIPESLLGCSRLYSVDFSRNGFTGSIPGELFQL-GLQNIYLSWNSLTGSIPQAGSPKLYQFLEELDLSHNRLSGEIPPSITQCSNLKLLSMSDNLIASKIPPEIGNLKSLVFLDLSYNHLFGAIPARLGNASALSVLQLDGNSLSGRIPAEIGECXXXXXXXXXXXXXTGNVPKELAKLSRLTKLNLAMNNFTGELPQQLGNLGHLLSVNISHNKLKGRLPA
Q9FEU2_______________TGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVFDNQLSGKIP-AELGRLANLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
531		12	87		0.992554
570	90			10	0.90298
595	11		88		0.923564
598	11	88			0.923564
642	11			88	0.923564
644	11	88			0.923564
646			88	11	0.923564
739	12	87			0.999964
747	87		12		0.999964
988	90			10	0.90298
989			90	10	0.90298
1044		12		87	0.992554
1045	12		87		0.992554
1070		87		12	0.992554
1159		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain