SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34964

Length: 1114 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34964

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome subunit RPN2a [Arabidopsis thaliana]	-	-	0.0	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	26S proteasome regulatory subunit	-	-	3.376e-09	-

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; CHLREDRAFT_192526; CYP87D8; F13M7.20; GSVIVT00009324001; GSVIVT00031868001; GSVIVT00035526001; MICPUCDRAFT_30827; MICPUN_60141; OSJNBa0060N03.12; OSTLU_39213; Os04g0608500; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; O

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr2:13880189-13885464 FORWARD LENGTH=1004	90%
RefSeq	Arabidopsis thaliana	NP_180832.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002300175.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 160 aas, your sequence is shorter than subject: 371 - 773

Fln protein: MAPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKQFLRESLRSANLEVIQHGACLGLGLAALGTADEEIYEDVKNVLYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHxxxxxVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTQLLQ

Protein Length: 372

Fln nts: TGATGGCTCCTTATCTTCCTCAGAATGGTACTAGTGGTGGTGGAAGCCCCTTTTCTGAGGGTGGAGCGCTATATGCCTTGGGACTTATACATGCAAACCACGGAGAAGGGATCAAGCAGTTTCTTCGTGAAAGCTTACGCAGTGCAAATCTTGAAGTAATTCAACATGGTGCATGCTTGGGTTTGGGATTGGCTGCTTTAGGAACTGCTGATGAAGAGATTTATGAGGATGTCAAGAATGTTCTTTACTTAGATAGTGCAGTTGCTGGAGAGGCTGCAGGCATAAGTATGGGATTGCTTATGGTTGGAACTGCAAGTGAAAAGGCCAGTGAGATGCTTGCATATGCACATGATACCCAACATGAAAAGATTATCAGAGGTCTGGCCCTTGGAATCGCACTAACTGTCTATGGAAGAGAAGAAGAGGCTGATACACTTATAGAGCAAATGACTCGTGATCAGGATCCAATTCTACGCTATGGTGGGATGTATGCTCTGGCCCTCGCATACAGAGGCACATCCAATAACAAAGCCATTCGTCGTCTGTTGCACTTTGCTGTTTCCGATGTTAGTGATGATGTGAGAAGAACTGCGGTGCTGGCACTTGGATTTGTTTTATACTCTGAACCTGAGCAGACCCCACGAATAGTTTCTTTGTTGTCCGAGTCATATAATCCACATGTCAGATATGGAGCAGCCTTGGCAGTGGGTATCTCTTGTGCAGGCACAGCATTAAGTGAGGCCATTTCACTGCTGGAACCATTAACATCAGATGTGGTAGATTTTGTTCGTCAAGGTGCTCTTATAGCCATGGCTATGGTTCTTGTGCAAACAAATGAGGCACGCGAGCCTCGTGTAGGTAGCTTCAGGCGTCAACTTGAAAAGATCATTCTTGACAAGCATxxxxxxxxxxxxxxxGTTGTTGGTATGGCAGTATTTAGTCAATTTTGGTATTGGTATCCTCTTGTATATTTTCTGAGCCTCTCTTTTGCACCTACTGCTTTGATTGGGCTCAATTATGAACTGAAGGTCCCAAAATTTGAGTTTCTTTCACATGCCAAGCCCTCATTATTTGAGTACCCTCGTCCTACGACACCTCCAACACAACTTCTGCAG

Fln Alignment:

Contig34964___MAPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKQFLRESLRSANLEVIQHXXXXXXXXXXXXXXDEEIYEDVKNVLYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRHIAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPR
B8LQS7_______________MAPYLPQHGSSGGGSPYSEGGALYALGLIHANHGEGIKEFLRESLRSTNVEIIQHGACLGLGLAALGTADEEIYEDVKNVLYTDNAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
876	66		33		0.997452
910	33	66			0.997452
911	66			33	0.997452
912		66		33	0.997452
913	66	33			0.997452
914	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain