SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34960

Length: 809 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase n=2 Tax=Picea sitchensis RepID=A9P272_PICSI	-	-	90%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Glutathione peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-hydroperoxide glutathione peroxidase.	EC:1.11.1.12	-	1.4013e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.4013e-45	%
Sma3	Glutathione peroxidase.	EC:1.11.1.9	-	2.435e-33	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		2.435e-33	%
Sma3	Arachidonic acid metabolism	00590		2.435e-33	%

Source	Gene names
Sma3	AP2_C11.1; AT2G31570; At1g63460; At2g25080; At2g31570; At2g43350; At2g48150; At3g63080; At4g11600; At4g31870; BarPHGPX; CHLREDRAFT_137012; CHLREDRAFT_188373; CHLREDRAFT_206090; CSA; F11C18.70; F11L15.5; F13D4.40; F2K11.16; GHPOD; GP; GP1; GPX; GPX1; GPX2;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	selenium binding	GO:0008430	Molecular Function	-
Sma3	phospholipid-hydroperoxide glutathione peroxidase activity	GO:0047066	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	cellular response to water deprivation	GO:0042631	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31870.1	ATGPX7, GPX7 glutathione peroxidase 7 chr4:15410205-15411617 FORWARD LENGTH=233	73%
RefSeq	Arabidopsis thaliana	NP_194915.2	glutathione peroxidase 7 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002299536.1	glutathione peroxidase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
322	10	90			0.90298
324		90	10		0.90298
325		90	10		0.90298
351	90		10		0.90298
695		5		94	0.999994
743	14	85			0.993533
744	14			85	0.993533
745		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain