SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34948

Length: 1364 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] ref\|NP_001190761.1\| F-box protein [Arabidopsis thaliana] sp\|O49508.1\|FB237_ARATH RecName: Full=F-box protein At4g18380 emb\|CAA16718.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB78840.1\| hypothetical protein [A	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	F-box domain containing protein	-	-	5.858e-16	-

Source	Gene names
Sma3	At1g30200; At4g18380; At5g46170; F12P21.1; F28J12.40; GSVIVT00022244001; GSVIVT00028329001; LOC_Os03g20500; MCL19.23; OJ1005_B11.4; OSJNBa0088I06.3; Os01g0770400; Os01g0812200; Os03g0321300; Os05g0490300; Os05g0510400; OsI_03898; OsI_04173; OsI_11347; OsI

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18380.1	F-box family protein chr4:10157957-10159099 FORWARD LENGTH=380	66%
RefSeq	Arabidopsis thaliana	NP_001190761.1	F-box protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002317281.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: ERROR#3, very serious frame error, Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 267 - 361

Fln protein: NNNGKSKGIWSYLMRIMMSSIVRPWQTLQHVLGPKKSMVAEVSHHSPGEVLKNFKEVQNLRIELPGGELGIEDGLLLKWKAVFGSTLESCVILGASSVFNPAKDKRDGNCDLEKSWxxxxxxxxxxxxWTISSLIAASARHYLLQNIISEHPTLENLILTDSDQQGVLCMNRSQLQEFRDKPLAASASSNRTQVPALNMKLWYAPCLELPCGMVLKGATLVSIRPCEYPICKETDGFLAGAFEGPFKTAASLLSKRRTYLLEMNSF*

Protein Length: 268

Fln nts: AACAATAATGGTAAAAGCAAAGGGATATGGAGTTATTTGATGAGAATCATGATGAGTAGCATTGTTAGGCCATGGCAGACATTGCAGCATGTTTTGGGCCCGAAGAAATCCATGGTTGCAGAGGTCTCCCATCATTCTCCCGGTGAGGTTTTAAAGAATTTCAAGGAAGTGCAGAATCTGAGGATTGAATTGCCCGGTGGAGAACTGGGCATTGAAGATGGTTTGCTGTTGAAGTGGAAAGCCGTTTTTGGGAGTACTTTGGAGAGTTGTGTTATCCTCGGGGCCTCTTCGGTCTTCAATCCCGCGAAGGATAAGAGAGATGGTAACTGTGATTTAGAGAAGTCATGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGACCATTAGCTCCCTTATTGCAGCCTCTGCAAGGCATTATCTTCTTCAAAATATCATATCTGAGCATCCCACCTTGGAAAATCTTATTCTTACTGATTCAGATCAGCAAGGAGTTCTATGCATGAACAGAAGTCAATTGCAAGAATTTCGTGATAAACCTCTTGCAGCCTCTGCTTCATCTAACAGAACCCAAGTTCCTGCACTAAATATGAAGCTTTGGTATGCCCCATGTCTGGAGCTCCCATGTGGAATGGTGTTGAAGGGTGCGACACTGGTCTCAATTCGCCCTTGTGAGTACCCAATATGCAAGGAAACTGATGGATTTTTGGCTGGAGCTTTCGAAGGACCATTCAAGACTGCAGCTAGCCTGCTTTCAAAGCGGAGGACATATCTTCTGGAAATGAATTCATTCTAGGCCTCTGAAGTTTGAATATAGGCAGTTAGCTCAACTGTTACAGGATTCTCTATGATTTATCCCTAGTTTCTATACATTCAAGAAGTCTGTGAATGGAATATCAGTTGATATCAGAGTAATTTGATCCCGCCTTTGAATTTGGTGCTTCCATAAATTGTCCAAATGGGTAAAAGCTGGCAACCATTCTGATTATCAATGAGCTGGAGTGGGGATGCTGTTACCACTTTCCCTTGCTCGACAATTTGTCCAGATCCACTACAATCTTTTCAAAAGTTCATCAGAGTACTTTTCAGCCCTGCATTTCCTCTTCGTGTCACTGATATGCCAGTGTAAGAACTCTTGATGACCATTTGATTTGTTGCGAGGATGATAAGAGTCAGGAAATTGTTATTTGTAGAGAGACCATCATTTCTAATTTCTGATAAAGTTTTATCACGTGAAGGCTATGTACAAGTTGGGTTGAAAAATTCCAACATCTCTCATTGCCATGCAAGGATAAAACTATACAGGACAAGTGAAAGAATATGTCCTCAGCAAGCATAACCATAGATTACCTTTAATGTTT

Fln Alignment:

Contig34948___NGKSKGIWSYLMRIMMSSIVRPWQTLQHVLGPKKSMVAEVSHHSPGEVLKNFKEVQNXXXXXXXXXXXXXXXXXXKWKAVFGSTLESCVILGASSVFNPAKDKRDGNCDLEKSWLLQENGASESGxxxxxFFKKMGL-LRVVWTISSLIAASARHYLLQNIISEHPTLENLILTDSDQQGVLCMNRSQLQEFRDKPLAASASSNRTQVPALNMKLWYAPCLELPCGMVLKGATLVSIRPCEYPICKETDGFLAGAFEGPFKTAASLLSKRRTYLLEMNSF
A9NW74_______________SGRSRGFIGLFVKLVIGSIVKPLQALQQILGTKKVVLAEVSHHSPGEVLKNFKEIQNLRIELPGGELGVEDGVLLRWRAEFGSTLESCVILGSTSYFCEKNSRKNPRSAIQRTEEFNE-GLDDNGxxxxxFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDADGQGMLCMGKAQLREFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1160		12		87	0.992554
1194	12		87		0.992554
1195		12		87	0.992554
1196	87		12		0.992554
1197			87	12	0.992554
1198	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain