SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34921

Length: 1832 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34921

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXF3_RICCO	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	MLO-like protein 4	-	-	1.052e-08	-

Source	Gene names
Sma3	AT4G02600; AT5G53760; At1g11000; At1g26700; At2g17430; At5g53760; F5J6.19; GSVIVT00027647001; GSVIVT00035478001; GSVIVT00036763001; H0901F07.8; LOC_Os11g07920; MLO11; MLO14; MLO4; MLO7; OSJNBb0017I01.22; Os04g0680800; Os11g0181400; OsI_17951; OsI_35352; O

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11000.1	MLO4, ATMLO4 Seven transmembrane MLO family protein chr1:3671935-3675909 REVERSE LENGTH=573	54%
RefSeq	Arabidopsis thaliana	NP_563882.1	MLO-like protein 4 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002331489.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 103 aas, putative chimeric sequence, your sequence is shorter than subject: 330 - 483

Fln protein: LLAALEKIKEELMLLGLISLILSLSSRRMSDICVKSSLYSSLFYPCSKKDYESDEKHLNHSSVSRVYTPQYHLHVADQQQPVVSNPCNKGQEPFVSYESLEQLHRLLFVLGVTHVLYCCLTMLLAMIKIYSWKPWEMEAHSKLITNRPDGTRRNVVFRRQSTFVLSHASHPWIKNRVLIWVICFLRQFFRSVMKGDYTALRLAFITNHRLRITYDFHSYMVRTMEDEFKEIVGISWELWGYAIICMFFNLHGLNFYFWISWIPAILILLLGTKLQHVMARLAMENVVDPVAGTQLKPHDALFWFDKPQLLLWFIHFISFQWELKLILVS*

Protein Length: 331

Fln nts: CTCTGCTGGCAGCTCTAGAGAAGATCAAAGAGGAGCTGATGTTACTGGGACTGATATCGTTGATATTGTCTCTATCTTCAAGACGGATGTCTGATATCTGCGTGAAATCATCACTATACAGTAGCCTATTTTATCCTTGTTCCAAGAAAGATTATGAAAGTGACGAAAAACATTTAAACCACTCATCAGTTAGCCGTGTTTACACTCCACAATATCATTTACACGTTGCTGATCAACAACAGCCTGTTGTTAGCAATCCCTGCAATAAGGGTCAGGAGCCTTTTGTTTCATATGAAAGCCTTGAGCAGCTGCATCGCCTTCTCTTTGTCCTTGGTGTTACGCATGTCTTGTATTGCTGTTTGACTATGCTTTTAGCAATGATAAAGATTTATAGCTGGAAGCCCTGGGAAATGGAAGCTCATTCGAAACTTATCACTAATAGGCCTGATGGCACGAGGAGGAATGTGGTATTCAGACGTCAATCTACTTTTGTGCTTAGTCATGCTTCACATCCTTGGATCAAGAATAGAGTCCTTATTTGGGTGATTTGCTTTTTGCGGCAGTTTTTCCGATCTGTAATGAAGGGAGACTACACTGCATTACGTTTGGCCTTCATCACGAACCATAGATTGCGTATCACCTACGACTTCCATAGCTACATGGTGCGTACTATGGAGGATGAATTCAAAGAAATTGTCGGCATTAGCTGGGAGCTATGGGGTTATGCGATAATATGCATGTTCTTCAATTTGCATGGGCTGAACTTTTACTTCTGGATATCATGGATCCCTGCAATTTTAATATTGTTACTTGGCACAAAACTACAACATGTGATGGCAAGACTGGCCATGGAGAATGTCGTGGATCCAGTTGCAGGGACTCAATTAAAACCTCATGATGCACTTTTCTGGTTTGATAAACCTCAACTCCTGTTGTGGTTTATTCATTTTATTTCATTTCAGTGGGAATTAAAGCTCATACTTGTTTCATGA___AGGACCATGCATTTGTCTACACACGTTTAATTTCAGGGCTATTAGTTCAGTTCTGGTGTAGCCATGGCATCCTTCCTCTTTATGCAATTGTTACGCAGATGGGATCCCGGTACAAGAAGGCCTTGGTTACAGAAGAAATCAGAGAATCCCTTCATGGTTGGCGCAAGCGAGTTAGGGAGAAAGCAAAGCGTGATTCCTCACAGCCATCTCTGACAACCACAAAATCATCCATGTCATCTGAGCCTGTTGATGTTGACAAAGATGAAATTGGCAACCGTTTAGAAGCAGAATGTCTCTCTGTCAGTCTGTCTAATATCACAAAAAGGTCCAATAACCTGCAGAGAGAGTTATCTACAACTCCCTTAGCTCAGGATTTTGAGGAGAAAACTACTACTCATCTGATTCAACAAGAGGAAACACTAGGATCTCGTGTTTCTGTATATTCTTCTAGGTCATTAGAATATGTAGTTCCAGTAGAACCAGACAGTATGGATGACATGGATGATGATGATGATTCCACAGATGAGGAAAATGGCGAGGTAGAAGAACCTGTTGTGGAACCCTCTGAAGCTCCTTAAAGTCCTCACATCATGAACCTTCAACTCTTTGGAAGATTGAGAACAAAGGAGAAGAACACTATTTAATGTTACGTTTATAGAAGGATACAGACACAGCTACCATACTTAATAGCCTCCAAGGCCTATGATACAAGGAATGAATGAATGCAATGCAATATCTTTACTTGCACTCTGGCAAATTGGTCCATGGGATCTGTTACATGTAAAGTTGCTCTGTATTGTTCTACTAGAGTTTCCTTCTGTTCAAGAATCCCGGTAATGA

Fln Alignment:

Contig34921___CNKGQEPFVSYESLEQLHRLLFVLGVTHVLYCCLTMLLAMIKIYSWKPWEMEAHSKLITNRPDGTRRNVVFRRQSTFVLSHASHPWIKNRVLIWVICFLRQFFRSVMKGDYTALRLAFITNH-RLRITYDFHSYMVRTMEDEFKEIVGISWELWGYAIICMFFNLHGLNFYFWISWIPAILILLLGTKLQHVMARLAMENVVDPVA---GTQLKPHDALFWFDKPQLLLWFIHFISFQ
B8LMC0_______________CSEGKKPFLSLEAVHQLHIFIFVLAIVHVLFSVLTMLLGSAKIRTWKPWEEDIQAKRYGTEDAINRITQVAHHD--FVKTHAMGTWGKSDLLSWMVSFLRQFYGSVKKSDYSTLRLGFIEKHCKTNPTFNFHNYMMRTLEADFKKVVGISSYLWGFVVIFLLLNIEGWHTYFWIAFIPLILLLAVGAKLEHIITQLAQEVVEKHTAVEGDLVVRLSDEHFWFGKPKLVLYLIHFILFQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
502	33	66			0.997452
628		11		88	0.923564
629	88			11	0.923564
747	16			83	0.994512
861		20		80	0.995493
862	20		80		0.995493
864		80		20	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
1493	1507	GAT GAT GAT GAT GAT	15
1705	1717	GAAT GAAT GAAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain