SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34909

Length: 1933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34909

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UMP synthase [Nicotiana plumbaginifolia]	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	UMP synthase	-	-	2.27e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.4.2.1-	-	2.106e-11	-
Sma3	Orotidine-5'-phosphate decarboxylase.	EC:4.1.1.23	-	1.893e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		1.893e-22	%
Sma3	Metabolic pathways	01100		1.893e-22	%

Source	Gene names
Sma3	AT3G54470; At3g54470; B1147A04.39; CHLREDRAFT_116267; GSVIVT00031018001; GSVIVT00031022001; MICPUCDRAFT_21243; MICPUN_80764; MtrDRAFT_AC153125g17v2; OPRT-OMPDC; OSTLU_19418; Os01g0951400; OsI_05207; OsI_05215; OsI_05216; OsJ_04775; Ot03g01130; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	orotate phosphoribosyltransferase activity	GO:0004588	Molecular Function	-
Sma3	orotidine-5'-phosphate decarboxylase activity	GO:0004590	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	'de novo' pyrimidine base biosynthetic process	GO:0006207	Biological Process	-
Sma3	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	pyrimidine ribonucleotide biosynthetic process	GO:0009220	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Orotidine 5'-phosphate decarboxylase domain	IPR001754	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Orotate phosphoribosyl transferase, clade 1	IPR004467	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Orotidine 5'-phosphate decarboxylase	IPR014732	-	-
Sma3		IPR015740	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Orotidine 5'-phosphate decarboxylase, active site	IPR018089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54470.1	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) chr3:20168285-20170245 REVERSE LENGTH=476	74%
RefSeq	Arabidopsis thaliana	NP_680130.1	orotidine 5'-phosphate decarboxylase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002304789.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9B8

Fln msg: Overlapping hits, possible frame ERROR between 880 and 768, your sequence is shorter than subject: 465 - 483

Fln protein: MEELILELHKVEAVKFGNFKLKSGISSPIYIDLRLIVSYPNLLKLVSETIWNKVSSLKFEVICGVPYTALPIATCISLGHSVPMVMRRKEVKDYGTRKSIEGVFSPGQTCLVIEDLVTSGASVMETVEPLKSVGLNVSDAVVLIDREQGGSDNLVSNGIQLHSALKLTQMVDVLVRHGKLSGEIADSVRTFVAENQTKVPAPSPSLAQNPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx*ICLLKTHVDILPDFTPDFGAQLRVSIADKHDFLIFEDRKFADIGNTVTMQYEGGIFKIVEWADVVNAHVIPGPGIVEGLKLKGLPHGRGLLLLAEMSSAGNLAKGEYTSAAVKIASDHPDFVIGFISVNPAAWPEGPGNPALIHMTPGVQLSSGGDALGQQYNTPNSVIGERGSDIIIVGRGIIKAKDQAMAAHQYRVAGWDAYEKNIKREGGL*

Protein Length: 466

Fln nts: ATCAATAGCCAGAGCCATCCTTGAGTTTTATGACCCAAGTTATCTGGCAGTGGTAGGGAAGGAAAGCAAAAGCTTATTTGTTATCTGTTACTGAGATATTTGCTTTTGTTTGGCTTGGTTTGGAGGGTAGATTGCA_-_ATGGAAGAACTGATACTGGAGCTTCACAAGGTTGAAGCTGTGAAATTTGGGAACTTCAAGCTCAAGAGTGGGATATCGTCCCCCATATACATTGATTTGAGGCTTATAGTCTCATACCCAAATCTGCTCAAGCTTGTTTCTGAGACCATCTGGAACAAGGTCTCATCCCTCAAATTTGAGGTAATCTGTGGAGTCCCCTACACCGCTCTACCCATTGCAACATGCATCTCACTGGGCCACTCGGTTCCCATGGTCATGAGAAGAAAGGAGGTCAAGGATTATGGCACCAGAAAATCCATTGAAGGAGTCTTCAGCCCAGGGCAAACATGCCTGGTTATTGAAGATCTGGTGACAAGCGGGGCCTCTGTAATGGAGACAGTTGAGCCTCTTAAATCCGTCGGCCTCAATGTGAGTGATGCTGTTGTTCTGATTGACAGAGAGCAGGGTGGGTCAGATAACTTGGTCAGCAATGGCATTCAATTGCACTCGGCCCTTAAGCTCACACAAATGGTGGATGTGCTCGTGAGGCATGGCAAGCTATCTGGAGAGATCGCGGATTCTGTCAGGACGTTCGTCGCAGAGAACCAGACGAAGGTGCCTGCCCCTTCCCCTTCTCTTGCTCAGAACCCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGATATGCCTTCTGAAAACACATGTTGACATACTACCTGACTTCACACCTGACTTTGGTGCTCAGCTTCGTGTTTCGATTGCAGACAAGCACGATTTCTTAATTTTTGAAGATAGGAAGTTTGCTGACATTGGAAATACAGTGACCATGCAATACGAAGGAGGAATTTTCAAAATTGTAGAGTGGGCAGATGTTGTAAATGCACATGTCATTCCGGGTCCTGGCATAGTGGAAGGGTTGAAACTGAAGGGCTTGCCACATGGAAGGGGTCTACTGCTACTTGCAGAAATGAGCTCTGCTGGAAATCTTGCCAAGGGTGAATATACATCTGCTGCAGTAAAGATTGCCTCTGACCATCCTGACTTTGTAATTGGGTTCATATCTGTTAATCCAGCAGCTTGGCCAGAGGGACCAGGAAACCCTGCATTGATACACATGACTCCAGGAGTACAGTTGAGCAGTGGAGGAGATGCTCTGGGTCAGCAGTACAACACTCCTAATTCAGTTATTGGAGAAAGGGGTAGCGATATAATAATTGTTGGTCGTGGTATTATCAAAGCAAAGGACCAAGCTATGGCAGCCCACCAATACCGCGTTGCGGGATGGGATGCATATGAGAAAAACATCAAAAGGGAAGGAGGGCTTTAA___ACAGATGATTTATTGGTTCAGTGGAAGTGTGTGAGATTTCTGTTAAGATTGAATCAGTGAATACTTCAATGGAAATTTGGTTTTACTGCAGTTTTCTTTCATCACGATCAGAGTGATTGTGTATTTGAGAACATAAATAATATTGTCCCTCATTCCATATGCTGCTGCCAATAATTTACTTATTGAACTTCTCTCTGCACCTACGAATAAATGTTTTATGCAATACTGCAGGTGATGATTCCAGGGAATCTCATTATTTGCCCCCTTTCTTTCTATTTGTCTCTAGTGGACAGTAAAGGCAATAATTGTGTTTTTCAATCATTGCAAATGCAGATTGACAAAGTTCATATGTTGTAATGAAGTTGAATCTATTGACTGTCAGCAATGAAATGGATAATAAACCT

Fln Alignment:

Contig34909___MEELILELHKVEAVKFGNFKLKSGISSPIYIDLRLIVSYPNLLKLVSETIWNKVSSLKFEVICGVPYTALPIATCISLGHSVPMVMRRKEVKDYGTRKSIEGVFSPGQTCLVIEDLVTSGASVMETVEPLKSVGLNVSDAVVLIDREQGGSDNLVSNGIQLHSALKLTQMVDVLVRHGKLSGEIADSVRTFVAENQTKVPAPSPS----------------------LAQNPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxL*ICLLKTHVDILPDFTPDFGAQLRVSIADKHDFLIFEDRKFADIGNTVTMQYEGGIFKIVEWADVVNAHVIPGPGIVEGLKLKGLPHGRGLLLLAEMSSAGNLAKGEYTSAAVKIASDHPDFVIGFISVNPAAWPEGPGNPALIHMTPGVQLSSGGDALGQQYNTPNSVIGERGSDIIIVGRGIIKAKDQAMAAHQYRVAGWDAYEKNIKREGGL
D5A9B8_______________MEELILELHKVEAVKFGNFTLKSGIISPIYIDLRLIVSYPHLLKLVSETIWNKVSSLKFELICGVPYTALPIATCISLAHSVPMVMRRKEVKDYGTKKSIEGVFSPGQTCLVIEDLVTSGASVLETVGPLKSVGLNVSDTVVLIDREQGGSDNLANNGIALHSALKLTQMVDVLVRHSKLSAEIADSVRKFIAENQTKVPVPSPSPSLAPAPVDGVRKRSSYGERAALAQNPTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPEICVLKTHVDILPDFTPDFGAQLR-AIADKHDFLIFEDRKFADIGNTVTMQYEGGIFKIVEWADVVNAHVIPGPGIVEGLKLKGLPHGRGLLLLAEMSSAGTLAKGEYTSAAVKIASDHPDFVIGFISINPAAWPEGPGNPALIHMTPGVQLSSGGDTLGQQYNTPDSVIGERGSDVIIVGRGIIKAKDQVMAARQYRIAGWNAYEKNVKMGGGL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1261		90		10	0.90298
1515			20	80	0.995493
1518	20		80		0.995493
1531	83	16			0.994512
1532	83			16	0.994512
1534	71	14		14	0.984337
1535			85	14	0.993533
1536	71	14			0.984337
1537		14		85	0.993533
1538	14		85		0.993533
1547		14	85		0.993533
1548			14	85	0.993533
1555	14		85		0.993533
1556	85	14			0.993533
1557	85	14			0.993533
1558			85	14	0.993533
1561			14	85	0.993533
1562		14	85		0.993533
1565	85			14	0.993533
1566		14	85		0.993533
1569		14		85	0.993533
1572	14			85	0.993533
1597	20			80	0.995493
1690	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain