SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34901

Length: 436 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene34901
AAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACATACCTTATTGAGCAGAGTAAAGCTCAATTGGTAGTCGTTGCACATGATGTTGATCCAATTGAGTTGGTAGTGTGGCTTCCTGCACTTTGTAGAAAAATGGGGAAAGCACGTCTTGGATCGATTGTGCACAAAAAAACAGCAACAGCCTTGTGTCTGTGAAGAATGAGGACAAGATGGAATTTAGCAAGATTGTTGAGGCAGTAAAGGCTAACTTCAATGACAAGTTTGATGAGTATCGGCGACAATGGGGAGGTGGCATTATGGGAACCAAATCGCAGGCAAAAACAAAGGCCAAGGAAAAACTTGTGGCCAAGGAAGCAGCACAGAGGCTCACTTAAGAATAATTCCTCGGAATATTTTTCCCATTTTCAAATTTTTATTGGATTGTCTTTTGCAG

Ace file of the UniGene sp_v3.0_unigene34901 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein l7a [Oryza sativa Indica Group]	-	-	2.94273e-44	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	60S ribosomal protein L7a, putative	-	-	1.42e-08	-

Source	Gene names
Sma3	At2g47610; At3g62870; B1033B05.14; CHLREDRAFT_195599; F26K9_300; GSVIVT00017539001; GSVIVT00017978001; GSVIVT00031155001; GSVIVT00037895001; GSVIVT00038087001; MICPUCDRAFT_51525; MICPUN_107645; OSTLU_41276; Os01g0924800; Os08g0326400; Os09g0507800; OsI_04

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfotransferase activity	GO:0008146	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal protein L7A/L8	IPR001921	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3		IPR005132	-	-
Sma3	Peptidase C50, separase	IPR005314	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Mo25-like	IPR013878	-	-
Sma3		IPR014734	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein chr3:23242862-23244273 REVERSE LENGTH=256	5.60519e-45	78%
RefSeq	Arabidopsis thaliana	NP_191846.1	60S ribosomal protein L7a-2 [Arabidopsis thaliana]	7.00649e-45	78%
RefSeq	Populus trichocarpa	XP_002300126.1	predicted protein [Populus trichocarpa]	1.4013e-45	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADJ2

Fln msg: Overlapping hits, possible frame ERROR between 195 and 186, your sequence is shorter than subject: 126 - 258

Fln protein: KPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKMGKARLGSIVHKKTATxxxxxKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKLVAKEAAQRLT*

Protein Length: 127

Fln nts: AAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACATACCTTATTGAGCAGAGTAAAGCTCAATTGGTAGTCGTTGCACATGATGTTGATCCAATTGAGTTGGTAGTGTGGCTTCCTGCACTTTGTAGAAAAATGGGGAAAGCACGTCTTGGATCGATTGTGCACAAAAAAACAGCAACAxxxxxxxxxxxxxxxAAGAATGAGGACAAGATGGAATTTAGCAAGATTGTTGAGGCAGTAAAGGCTAACTTCAATGACAAGTTTGATGAGTATCGGCGACAATGGGGAGGTGGCATTATGGGAACCAAATCGCAGGCAAAAACAAAGGCCAAGGAAAAACTTGTGGCCAAGGAAGCAGCACAGAGGCTCACTTAAGAATAATTCCTCGGAATATTTTTCCCATTTTCAAATTTTTATTGGATTGTCTTTTGCAG

Fln Alignment:

Contig34901___KPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKM--------GKARLGSIVHKKTATALCxVSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQXXXXXXXXXXXXXXAQRLT
D5ADJ2_______________KPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCxTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKLVAKEAAQRLT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
422	25			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain