SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34886

Length: 1565 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34886

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Malate dehydrogenase n=10 Tax=Pinaceae RepID=A9NVT9_PICSI	-	-	0.0	92%
FL-Next	sp=Malate dehydrogenase, cytoplasmic; Zea mays (Maize).	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Sma3	Malate dehydrogenase.	EC:1.1.1.37	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Pyruvate metabolism	00620	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	%
Sma3	Methane metabolism	00680	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, NAD-dependent, cytosolic	IPR011274	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04410.1	Lactate/malate dehydrogenase family protein chr1:1189418-1191267 REVERSE LENGTH=332	88%
RefSeq	Arabidopsis thaliana	NP_171936.1	malate dehydrogenase [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002332745.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q08062

Fln msg:

Fln protein: MAKEPARILVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGIVATTDPVEACSGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLHVPVSNVKNVIIWGNHSSSQYPDVYHASVVTGAGEKPVRELVADDAWLDGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTFVSMGVYSDGSYDVPPGIIFSYPVTCENGSWSIVQGLPINEFSRKKLDATANELVEEKALAYSCLN*

Protein Length: 334

Fln nts: CACCCACTCCGGGCTGACACACATGATGTCAAACCCCTACCAGAATTTTGCCTTTTTACCGGAGGAATCCATTCTACGCTATCTTAATACCTATAAATACGTATTGGTGGGTAGATAGGCAGATCACTCGTTCAACCAATTTCATTTCATTTGCTTGCTTTGGGCCAGTTTAGCAGACAACACTTCGAA_-_ATGGCGAAGGAACCTGCTCGTATTCTTGTCACTGGAGCTGCAGGACAAATCGGTTATGCATTGGTGCCTATGATTGCTAGAGGCATAATGCTTGGCCCGGACCAACCTGTTATCTTGCACATGCTTGATATTCCTCCAGCAGCAGAGGCTCTGAATGGGGTGAAAATGGAGTTGATAGATGCTGCTTTCCCTCTTTTGAAAGGTATTGTTGCCACCACGGATCCTGTTGAAGCATGTAGTGGTGTAAACATAGCTGTCATGGTTGGTGGATTCCCCAGGAAGGAAGGTATGGAAAGGAAGGATGTTATGTCTAAAAATGTATCTATCTACAAGTCACAGGCCTCAGCATTGGAGCAACATGCTGCTCCAAATTGCAAGGTCTTGGTGGTTGCTAACCCAGCAAATACTAATGCACTGATTTTGAAAGAGTTTGCCCCATCTATTCCGGAGAAGAATGTAACATGCTTGACAAGACTCGATCACAATAGGGCTCTTGGACAGATTTCAGAGAGGCTACACGTTCCAGTCAGTAATGTAAAGAATGTTATAATTTGGGGAAATCACTCTTCAAGCCAGTATCCAGACGTTTACCATGCCTCAGTTGTAACTGGAGCAGGAGAGAAACCAGTGCGAGAGCTTGTTGCAGATGATGCTTGGTTGGATGGGGAATTTATCACCACTGTACAGCAACGTGGTGCAGCAATTATCAAGGCACGGAAGCTGTCTAGTGCACTATCTGCTGCTAGTTCCGCATGCGATCATATCCGTGATTGGGTGCTTGGTACACCTAAGGGTACATTTGTTTCAATGGGTGTATATTCCGATGGATCTTATGATGTTCCACCTGGCATTATCTTCTCATATCCTGTTACTTGTGAAAATGGGAGTTGGTCCATTGTACAAGGACTTCCCATCAACGAGTTCTCAAGGAAAAAGCTGGATGCCACTGCAAATGAACTTGTTGAGGAAAAGGCTTTGGCTTATTCTTGCCTAAATTGA___TTTATCCTTTTCAGATGCATATGTTCAAGCAACTGATTTGAATAAGTGCTATTAGTGAGATAATTGCCAAATTTGGCTTTAGGTATTGGCATGGCTGATATGAGAGATTGCTACTATCCAGATTTTAGTTTGGCTGGAAAGATTTGCTGTAACAACATCACTTCAGTGGACTGTTTTTTCCACTATATAAGCACGTGTATGCAAAATTAAATCTGTTGTTTTCAGTTTCTTAGCATTTAGCTGCCTGCCATTTCTTTAGTCTAGGAACTTTGAAGTTAATAAAATAAATACATGGTCAATCTATCATTTTCTAAGTTTGGAGTATGCTGGTTACAACGTCAAGTTTTAATATGATGAATTTGAAGAGGTTTTGGGAT

Fln Alignment:

Contig34886___MAKEPARILVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGIVATTDPVEACSGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLHVPVSNVKNVIIWGNHSSSQYPDVYHASVVTGAGEKPVRELVADDAWLDGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTFVSMGVYSDGSYDVPPGIIFSYPVTCENGSWSIVQGLPINEFSRKKLDATANELVEEKALAYSCL
Q08062_______________MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSCL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1362			96	3	0.999999
1363			3	79	1.0
1402	4	95			0.999984
1411		7		92	0.999999
1414	6		93		0.999153
1415	6			93	0.999264
1416	6			93	0.999264
1417	6			93	0.999264
1418	6	93			0.999264
1567	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain