SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34884

Length: 1869 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34884

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref\|NP_568244.2\| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp\|Q9LFN6.2\|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp\|Q56XG6.3\|RH15_ARATH RecName: Full=D	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_819597;

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11170.1	DEAD/DEAH box RNA helicase family protein chr5:3553334-3556646 FORWARD LENGTH=427	92%
RefSeq	Arabidopsis thaliana	NP_568245.1	DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002309623.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg:

Fln protein: MGELKESDTYQEELLDYEEEDVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILQLAKEKDLNLKNVRHFILDECDRMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPAQIDTSTYMPS*

Protein Length: 429

Fln nts: TGCGTCTTCAGATCTGTTCGTTACCTCTCGGCGGTTGCGTGTTCGAGCCTCTACGCTCTCTGCGCGTCACATTTTCTCACGGTAGAAACCAAC_-_ATGGGAGAATTGAAGGAAAGCGACACTTACCAGGAAGAACTCCTTGACTATGAAGAAGAAGATGTTGCACAGGAATCAGTTGCAGCAAGGGGAGCTGGTGAAACTGTGAAAAAAGGTTATGTTGGCATTCATAGTTCAGGCTTCAGGGATTTTCTTCTGAAACCAGAGTTACTTCGTGCAATTGTAGACTCTGGATTTGAACATCCGTCAGAAGTACAACACGAGTGTATTCCCCAAGCAATCCTTGGGATGGATGTAATTTGCCAGGCAAAGTCTGGAATGGGGAAGACTGCTGTTTTTGTACTATCAACACTGCAGCAGATTGAACCTGTTGCAGGACAAGTTGCTGCTCTTGTCCTGTGTCATACTCGAGAATTGGCATATCAGATATGCCATGAATTCGAAAGGTTTATTACCTACTTGACAGACTTGAAAGTTGCTGTATTCTATGGGGGTGTAAATATCAAAACACATAAATCATTACTAAAAAATGAATGCCCCCATATAGTTGTTGGAACCCCTGGAAGGATACTGCAATTAGCAAAAGAGAAAGATCTGAATCTAAAAAATGTCCGGCATTTTATTCTGGATGAATGTGACAGGATGCTAGAATCTCTTGACATGCGGAAAGATGTCCAGGATATTTTCAAGATGACCCCTCATGACAAGCAAGTAATGATGTTCTCAGCCACACTGAGCAAGGAAATTCGGCCTGTCTGCAAAAGATTTATGCAAGATCCTATGGAGATATACGTTGATGATGAGGCAAAGTTGACACTTCATGGACTAGTTCAGCACTACATCAAGTTGAGTGAGCTGGAGAAGAACCGTAAATTGAATGATTTGCTCGATGCGCTGGACTTCAACCAAGTGGTGATATTTGTTAAGAGCGTGAACAGAGCTGCAGAGCTAAACAAGCTACTTGTGGAGTGTAACTTTCCTTCCATATGCATTCATTCTGGGATGACACAGGAAGAAAGATTGACAAGATACAAAGGTTTCAAGGAGGGTCATAAGAGGATATTAGTTGCAACTGATTTGGTTGGTAGAGGAATCGATATTGAGCGTGTAAATATTGTTGTTAACTATGACATGCCAGATTCTGCGGATACTTACTTGCACAGAGTTGGAAGGGCTGGCAGATTTGGTACGAAGGGTCTTGCAATCACGTTTGTTTCCTCTGCTTCTGACTCAGATGTGCTCAACCAGGTTCAAGAACGTTTTGAAGTTGATATAAAGGAGCTCCCAGCACAAATAGATACATCTACATATATGCCATCATAG___ATGATTTGGTATGATGCTACTTTCAAAGGCTTTTCAGTTCGAGCAATTTCAAGAAGGGGTTGATCTCGTTTCTGCCTCCCCTGGAAGGATGTCTGGAAAATTTTGAACACATCTGAGCTGGAGACAGCAGCGATTTTTGTTGAGCAGCATATATTTAGATTGATCAGTTAGTTTAACCTGACCTACTCTTATGATGGGATAATCACTCTGGAAATGCTGCTGAAGACTTGACTGAATTGATATATCCTATAAATGAACACATTGCTGTTGTATTAGCATTTGTTTATTAAGTACCTGGTCTTTCTTTTCACCCTGAAATGCTTTTGTAGGCTTATTTATTCAAATCTTTTACTTGTAACATATATATTGGTGCATTATTAATGCTCTCAGAAATGCCTAAAGGCTGAGATCCAAAATAGTATGAAGTGCCCTAATTTATGGCTATATCTTGAAAATATTGTGAATTAAAGATCATATGCAGGCATACGTATC

Fln Alignment:

Contig34884___MGELKESDTXXXXXXXXXXXXVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILQLAKEKDLNLKNVRHFILDECDRMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPAQIDTSTYMPS
D5A9C0_______________MGELKESDTYQEELLDYEEEDVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVGTPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPAQIDTSTYMPS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
231	90		10		0.90298
822		2		97	0.97849
825			97	2	0.97849
836	1	3		95	0.911382
837	4		95		0.999991
838			96	3	0.986325
839	95			4	0.999991
936	4			95	0.996599
1107	10			90	0.90298
1109	90			10	0.90298
1149		85		14	0.993533
1374	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain